Molecular Genetics and Metabolism 90 (2007) 227–265 www.elsevier.com/locate/ymgme
Program for SIMD Annual Meeting Renaissance Nashville Hotel (RNH) and Nashville Convention Center (NCC) Nashville, Tennessee Saturday, March 24, 2007 3:00 PM–6:00 PM
Registration—Renaissance Hotel—Main Lobby
Sunday, March 25, 2007 10:00 AM–6:00 PM
Registration—Renaissance Hotel—Main Lobby
12:00 PM–6:00 PM
Exhibit and poster set up—NCC—East Exhibit Hall—Level One
Hotel Check-In—Renaissance Hotel
1:30 PM–5:00 PM
ACMG-SIMD Joint Symposium—Nashville Convention Center (NCC)—Ballroom 206 Expanded Newborn Screening: How are We Dealing with Diagnostic Dilemmas and Counseling? What’s New on the Horizon? Moderators: Robert Steiner, MD, Oregon Health & Science University Georgirene D. Vladutiu, PhD, The State University of New York at Buﬀalo
1:30 PM–2:00 PM
Conﬁrmatory Newborn Screening Diagnostic Protocols Dietrich Matern, MD Mayo Clinic
2:00 PM–2:30 PM
False Positives and False Negatives: Impact on Physicians and Families Susan Waisbren, MD Children’s Hospital, Boston
2:30 PM–3:00 PM
The Next Generation of Newborn Genetic Testing: Severe Combined Immune Deﬁciency Jennifer M. Puck, MD University of California, San Francisco
3:00 PM–3:30 PM
Newborn Screening for Adrenoleukodystrophy: Implications for Therapy Ann Moser, BA Kennedy Krieger Institute, Baltimore
3:30 PM–4:00 PM
4:00 PM–5:00 PM
Positive Newborn Screens: Challenging Cases Moderator: Carol L. Greene, MD, University of Maryland Panel Members: Barbara K. Burton, MD, Children’s Memorial Hospital, Chicago, IL
1096-7192/$ - see front matter 2007 Elsevier Inc. All rights reserved. doi:10.1016/j.ymgme.2006.12.009
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Katherine H. Kim, MS, Children’s Memorial Hospital, Chicago, IL Piero Rinaldo, MD, PhD, Mayo Clinic, Rochester, MN Rani Singh, RD, Emory University, Atlanta, GA Cases presented by: Carol L. Greene, MD, University of Maryland (bMCC) Annette Feigenbaum, MD, The Hospital for Sick Children, Toronto (tyrosinemia) Nicola Longo, MD, PhD, University of Utah, Salt Lake City, UT (MMA, MCADD) Rani Singh, RD, Emory University (galactosemia) 7:00 PM–10:00 PM
Welcome Reception—Renaissance Nashville Hotel—East Grand Ballroom Lobby Level Sponsored in part by Ucyclyd Pharma
Monday, March 26, 2007 7:00 AM–8:15 AM
Breakfast—Renaissance Nashville Hotel—East Grand Ballroom Lobby Level
8:00 AM–12:00 Noon
Registration—outside Nashville Convention Center Ballrooms 204-206
8:00 AM–12:15 PM
NCC Ballrooms 204-206—Level Two Session 1: The Latest Updates on Inborn Errors of Metabolism Moderator: Nicola Longo, MD, PhD University of Utah
8:00 AM–8:45 AM
Inborn Errors: Past, Present and Future David Valle, MD Johns Hopkins University
8:45 AM–9:30 AM
A Novel, Palmitoyl-Protein Desaturase Function for the Batten Disease Protein Michael Bennett, PhD The Children’s Hospital of Philadelphia
9:30 AM–10:15 AM
Expanded DNA Diagnosis of Mitochondrial Disorders. Nuclear Genes Lee-Jun Wong, PhD Baylor College of Medicine
10:15 AM–10:45 AM
Coﬀee Break—NCC East Exhibit Hall—Level One
10:45 AM–11:30 AM
CPS I Polymorphisms and the Candidate Disease Approach to Research Marshall Summar, MD Vanderbilt University Medical Center
11:30 AM–12:15 PM
New Inborn Errors in the Pentose Phosphate Pathway Aﬀecting Polyol Metabolism: Transaldolase and Ribose-5-Phosphate Isomerase Deﬁciencies Cornelis Jakobs, MD VU University Medical Center, Amsterdam
12:15 PM–1:00 PM
Lunch—Renaissance Nashville Hotel—East Grand Ballroom Lobby Level (for paid registrants only—must pre-register—ticket required)
1:00 PM–1:45 PM
The Third Robert Guthrie Memorial Lecture—RNH East Grand Ballroom Who is Afraid of MS/MS? Myths and Challenges of Expanded Newborn Screening Piero Rinaldo, MD, PhD Mayo Clinic
2:00 PM–5:30 PM
Session II: Contributed Papers—NCC Ballrooms 204-206—Level Two Presentations from Travel Award Winners Moderator: William Gahl, MD, PhD NIH, National Human Genome Research Institute
2:00 PM–2:15 PM
Exploring Mucolipidosis II and III Sara S. Cathey, MD Greenwood Genetics Center
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
2:15 PM–2:30 PM
Cobalamin C Disease Identiﬁed By Expanded Newborn Screening: The California Experience Kristina Cusmano-Ozog, MD Stanford University
2:30 PM–2:45 PM
Citrin Deﬁciency: Apparent Founder Mutations in the French Canadian Population David Dimmock, MD Baylor College of Medicine
2:45 PM–3:00 PM
Metabolic Pathway Expression Proﬁling in C. Elegans Mitochondrial Respiratory Chain Mutants Marni Falk, MD The Children’s Hospital of Philadelphia
3:00 PM–3:15 PM
Expression and Characterization of Mutations in Very Long-Chain Acyl-CoA Dehydrogenase Using a Prokaryotic System Eric Goetzman, PhD Children’s Hospital of Pittsburgh
3:15 PM–3:30 PM
A Possible New Disorder of Cholesterol Biosynthesis Involving the 4a-Methylsterol-4Demethylase Complex Miao He, PhD Children’s Hospital of Pittsburgh
3:30 PM–4:00 PM
Coﬀee Break—NCC East Exhibit Hall—Level One
4:00 PM–4:15 PM
N-Acetylmannosamine Treatment Rescues GNE Knock-in Mice From Severe Neonatal Glomerular Hematuria and Podocytopathy. Insights for Hereditary Inclusion Body Myopathy Enriko D. Klootwijk, PhD NIH, National Human Genome Research Institute
4:15 PM–4:30 PM
Acute Presentation of b-Ketothiolase Deﬁciency: An Illustrative Case for Glucose Administration in Pediatric Advanced Life Support Linda M. Lukose, MD NIH, National Human Genome Research Institute
4:30 PM–4:45 PM
Multidisciplinary Study of in Utero Presentation of Fetal GM1 Gangliosidosis at 17 Weeks Gestation Susan Pattison, CCMG Fellow McMaster University
4:45 PM–5:00 PM
Oxidative and Endoplasmic Reticulum Stress In Novel Isogenic Cell Models For Classic Galactosemia Manshu Tang The Dr. John T. Macdonald Foundation Center for Medical Genetics
5:00 PM–5:15 PM
The Eﬀect of Phenylalanine and Tyrosine Intake on Tetrahydrobiopterin (BH4) Response in Phenylketonuria (PKU) Andrea Wierenga, PhD University of Miami
5:15 PM–5:30 PM
Development of a High-Throughput Assay for the Identiﬁcation of Small Molecule Inhibitors of Human Galactokinase Klaas J. Wierenga, MD University of Miami
5:30 PM—6:00 PM
Presentations from the 2006 Emmanuel Shapira Award Winners
5:30 PM—5:45 PM
Metabolic Control During Exercise With and Without Medium-Chain Triglyceride (MCT) in Children with Long-Chain 3-Hydroxyacyl-CoA Dehydrogenase (LCHAD) or Trifunctional Protein (TFP) Deﬁciency
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Melanie Gillingham, PhD, RD Oregon Health & Science University 5:45 PM-6:00 PM
Propionyl-CoA and Adenosylcobalamin Metabolism in C. elegans: Evidence for a Role of Methylmalonyl-CoA Epimerase in Intermediary Metabolism Randy Chandler, MB NIH, National Human Genome Research Institute Evening free in Nashville
Tuesday, March 27, 2007 7:00 AM–8:00 AM
Breakfast—Renaissance Nashville Hotel—Music City Ballroom—Level Two
8:00 AM–11:30 AM
Session III Modiﬁers of Metabolic Pathways-NCC Ballrooms 204-206–Level Two Moderator: Katrina Dipple, MD, PhD David Geﬀen School of Medicine at UCLA
8:00 AM–8:45 AM
Modiﬁers of Inborn Errors of Metabolism: A Systems Biology Approach Edward C. McCabe, MD, PhD Mattel Children’s Hospital at UCLA
8:45 AM–9:30 AM
Carrier Status as a Contributor to Complex Disorders Philip A. Wood, DVM, PhD University of Alabama at Birmingham
9:30 AM–10:15 AM
Multifunctional Regulators of Mitochondrial Iron Balance Grazia Isaya, MD Mayo Clinic
10:15 AM–10:45 AM
Break—NCC East Exhibit Hall—Level One
10:45 AM–11:30 AM
Modiﬁers of Electron Transport: Coenzyme Q10 Deﬁciency Michio Hirano, MD Columbia University Medical Center
11:45 AM–1:00 PM
SIMD Board Meeting—Jazz Room, 4th ﬂoor, Renaissance Nashville Hotel
12:30 PM–2:30 PM
Organization Meeting for the North America Metabolic Academy—INVITATION ONLY
2:30 PM–3:30 PM
2009 International Meeting—Organizing Committee Meeting Jazz Room, 4th ﬂoor, Renaissance Nashville Hotel Afternoon Free to Enjoy Nashville
1:00 PM–5:00 PM
Posters on display in Convention Center—NCC East Exhibit Hall—Level One
4:00 PM–6:00 PM
Posters Attended by Authors—NCC East Exhibit Hall—Level One Wine and cheese served
6:00 PM–7:00 PM
Dinner—(Optional: must be pre-paid) Renaissance Nashville Hotel—Music City Ballroom—Level Two
7:15 PM–7:45 PM
Donough O’Brien Presidential Address—NCC Ballrooms 204-206—Level Two Jerry Vockley, MD, PhD University of Pittsburgh
7:45 PM–9:00 PM
SIMD Business Meeting and Award Presentations—NCC Ballrooms 204–206 Emmanual Shapira SIMD Award (First Author of Best Publication in MGM) Neil Buist Award (Best Oral Presentation by a Trainee)
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Wednesday, March 28, 2007 7:00 AM–8:00 AM
Breakfast—Renaissance Nashville Hotel—Music City Ballroom—Level Two
8:00 AM–12:00 Noon
NCC Ballrooms 204-206—Level Two Session IV. Treatment of Inborn Errors of Metabolism in the Expanded Newborn Screening Age Moderator: John Phillips, MD Vanderbilt University School of Medicine
8:00 AM–8:45 AM
Babies and VLCAD Newborn Screening. What Does Genotype Mean? Arnold Strauss, MD Vanderbilt University School of Medicine
8:45 AM–9:30 AM
Survival of Patients with Urea Cycle Disorders Following Treatment of Hyperammonemia with Intravenous Sodium Phenylacetate and Sodium Benzoate Gregory M. Enns, MD Stanford University
9:30 AM–10:15 AM
An Update on the BioMarin PKU Clinical Development Program Alexander Dorenbaum, MD BioMarin Pharmaceutical, Inc.
10:15 AM–10:45 AM
Coﬀee Break—NCC East Exhibit Hall—Level One
10:45 AM–12:00 Noon
Ask the Experts: Challenge the Panel with Unusual and Unknown Cases. (Attendees may submit candidate cases in advance or at the meeting) Panel Experts: Barbara Burton, MD, Children’s Memorial Hospital, Chicago Annette Feigenbaum, MD, The Hospital for Sick Children, Toronto Stephen G. Kahler, MD, Arkansas Children’s Hospital, Little Rock Johan Van Hove, MD, PhD, The Children’s Hospital, Denver Adjourn
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Table of Contents Awards . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
List of Invited Speakers and Invited Speaker Abstracts . . . . . . . . . . . .
Abstract of Oral Presentations . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Abstracts of Poster Presentations . . . . . . . . . . . . . . . . . . . . . . . . . . .
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Awards The 2006 Emmanuel Shapira SIMD Award The Emmanuel Shapira SIMD Award was established in 2003 to recognize the best paper in the ﬁeld of biochemical genetics and metabolism published in Molecular Genetics and Metabolism (MGM) by an SIMD member or member’s trainee. It was named in memory of Emmanuel Shapira, M.D., Ph.D., one of the founders and most ardent supporters of the Society for many years. Dr. Shapira graduated with an M.D. from Hebrew University in Jerusalem and received his Ph.D. in immunochemistry at the Weizmann Institute of Science in Israel. He was a member of the Pediatrics Department faculty at Northwestern University Medical School in Chicago, and later became Professor of Pediatrics and Pathology and Director of the Hayward Genetics Center at Tulane University in New Orleans. Dr. Shapira’s clinical and research interests were focused on inborn errors of metabolism. He made numerous contributions to the ﬁeld of biochemical genetics and was a dedicated physician to his patients and a supportive and compassionate teacher to his students. His consistent participation in the annual meetings of the Society contributed both in knowledge and in spirit by making the meetings scientiﬁcally stimulating and enjoyable. This award, that bears his name and the name of the Society that he cherished, is intended to recognize high-quality work in the ﬁeld that he so loved. A $1000 prize is awarded annually to the ﬁrst author of the winning paper chosen by a committee that includes several members of the SIMD and the Editor-in-Chief of MGM. This year we have two winners of the Emmanuel Shapira award. Melanie Gillingham, Ph.D., R.D. from Oregon Health & Science University won for her publication, Melanie B. Gillingham, Bradley Scott, Diane Elliott, Cary O. Harding: Metabolic Control During Exercise With and Without Medium-Chain Triglyceride (MCT) in Children with LongChain 3-Hydroxyacyl-CoA Dehydrogenase (LCHAD) or Trifunctional Protein (TFP) Deﬁciency, Mol. Genet. Metab. 89 (102), September-October 2006, 58-63. Randy J. Chandler, M.B., from the National Institutes of Health, National Human Genome Research Institute also won an award for his publication, Randy J. Chandler, Vijay Aswani, Matthew S. Tsai, Marni Falk, Natasha Wehrli, Sally Stabler, Robert Allen, Margaret Sedensky, Haig H. Kazazian, Charles P.Venditti: Propionyl-CoA and Adenosylcobalamin Metabolism in C. elegans : Evidence for a Role of MethylmalonylCoA Epimerase in Intermediary Metabolism, Mol. Genet. Metab. 89 (102), SeptemberOctober 2006, 64-73. Both winners will give a brief oral presentation Monday afternoon, March 26, 2007 at the annual SIMD meeting. Past Winners of the Emmanuel Shapira Award: 2003—Elena Tartaglini, Ph.D. Judith C. Fleming, Ph.D. 2004—Gerard T. Berry, M.D.
The 2005 Neil Buist Award The Neil Buist Award was established in 2004 in honor of Dr. Neil Buist, a former President of the SIMD, who served continuously for 27 years on the Board of Directors of the Society until his retirement in 2003. It is awarded annually to the trainee who gives the most outstanding oral presentation at the annual meeting. The winner is selected by a committee of SIMD members during the course of the meeting. A plaque honoring the awardee will be presented this year during the business meeting. Past winners are: 2004—Lina S. Correa-Cerro, M.D., Ph.D. 2005—Amanda Helip-Wooley, Ph.D.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
The Third Robert Guthrie Memorial Lecture The Third Robert Guthrie Memorial Lecture will be given on Monday, March 26th at 1:00 PM by Dr. Piero Rinaldo, Professor of Laboratory Medicine, Department of Laboratory Medicine & Pathology, The Mayo Clinic, Rochester, Minnesota. Dr. Rinaldo is a well-known expert in the ﬁeld of newborn screening and more recently has a special interest in evaluating the eﬃcacy of expanded newborn screening. The lecture series was established to honor the contributions of Dr. Robert Guthrie to the prevention of genetic disease in children through newborn screening. Past Guthrie memorial lecturers have included Drs. Edwin Naylor and Harvey Levy. Lunch will be provided before the lecture. A lunch ticket will be required to attend. Preregistration was requested when you registered. If you are only attending the lecture, please arrive at 12:50 PM to get a seat. The lunch and lecture will be held in the East Grand Ballroom at the Renaissance Nashville Hotel.
2007 Travel Award Winners Sara Cathey Kristina Cusmano-Ozog David Dimmock Marni Falk Eric Goetzman Miao He Enriko Klootwijk Linda Lukose Susan Pattison Manshu Tang Andrea Wierenga Klaas Wierenga Each recipient received a travel award in the amount of $750. The winners of the 2007 Travel awards will give a brief presentation Monday afternoon, March 26th, 2007 at the SIMD Annual meeting.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Abstracts Invited Speakers Dietrich Matern Susan Waisbren Jennifer M. Puck Ann Moser David Valle Michael Bennett Lee-Jun Wong Marshall Summar Cornelis Jakobs Piero Rinaldo Edward C. McCabe Philip A. Wood Grazia Isaya Michio Hirano Arnold Strauss Gregory Enns Alex Dorenbaum *
Conﬁrmatory newborn screening diagnostic protocols False positives and false negatives: impact on physicians and families The next generation of newborn genetic testing: severe combined immune deﬁciency Newborn screening for adrenoleukodystrophy: Implications for therapy Inborn errors: past, present and future A novel, palmitoyl-protein desaturase function for the Batten disease protein* Expanded DNA diagnosis of mitochondrial disorders. Nuclear genes* CPS I polymorphisms and the candidate disease approach to research New inborn errors in the pentose phosphate pathway aﬀecting polyol metabolism: transaldolase and ribose-5-phosphate isomerase deﬁciencies Who is afraid of MS/MS? Myths and challenges of expanded newborn screening* Modiﬁers of inborn errors of metabolism. A systems biology approach* Carrier status as a contributor to complex disorders* Multifunctional regulators of mitochondrial iron balance* Modiﬁers of electron transport: coenzyme Q10 deﬁciency* Babies and VLCAD newborn screening. What does genotype mean?* Survival of patients with urea cycle disorders following treatment of hyperammonemia with intravenous sodium phenylacetate and sodium benzoate* An update on the BioMarin PKU Clinical Development Program
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
The Batten disease protein, CLN3P, is a novel modulator of membrane lipid rafts. Michael J. Bennett, Srinivas B. Narayan, Lu Tan, Johanne Pastor, Dinesh Rakheja. Department of Pathology and Laboratory Medicine, University of Pennsylvania and Children’s Hospital of Philadelphia, Philadelphia, PA, USA; University of Texas Southwestern Medical Center, Dallas, TX, USA. Batten disease (CLN3, Juvenile Neuronal Ceroid-Lipofuscinosis) is a severe autosomal recessive inherited neurodegenerative disorder. Presentation is in the ﬁrst decade of life with retinal degeneration leading to blindness. Subsequently, the disease is characterized with progressively refractile seizures, loss of motor function and ﬁnally loss of cognitive function prior to death in the third decade. Histologically the disease is characterized by intraneuronal storage of auto ﬂuorescent material, which on electron microscopy has a ﬁngerprint pattern. There is massive neuronal loss due to both apoptosis and autophagy. The protein encoded by the CLN3 gene is a 438 amino acid polypeptide of 48 kDa which although highly conserved has no homology to known functional proteins. CLN3P is resident on membrane lipid rafts, which may be endosomal, lysosomal, or, in the neurons, synaptosomal. Analysis of the amino acid sequence using the Pfam server identiﬁed a weak homology to stearoyl-CoA desaturases and we tested the hypothesis that CLN3P was a desaturase using a variety of substrates. CLN3P was found to have D-9 saturase with speciﬁcity for S-palmitoylated proteins and kinetics that were appropriate for a true physiological function. We synthesized an artiﬁcial substrate, S-palmitoyl-cysteine and used this in a mass spectrometric assay in tissues from the cln3)/) mouse (Hannah Mitchison, University College, London) and found that activity in brain and pancreas in young knockout mice was signiﬁcantly reduced. We chose tissues from young mice because the impact of the massive neuronal loss in older animals and also in humanCLN3 tissues would likely impact the activity. We also used RNA inhibition, which demonstrated total ablation of desaturase activity in a neuroblastoma cell line, which over expresses CLN3P. We believe that this novel enzyme activity is present in membrane lipid rafts to modify the function of critical palmitoylated proteins in the lipid raft and it’s deﬁciency results in abnormal function of the speciﬁc raft proteins due to altered protein–protein interactions.
Expanded DNA diagnosis of mitochondrial disorders: Nuclear genes. LeeJun C. Wong. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA. Objective: Mitochondrial respiratory chain (RC) disease is a dual genome complex disorder that can be caused by mutations in nuclear and mitochondrial genomes. Up to date, the molecular diagnosis has focused on the detection of mitochondrial DNA (mtDNA) mutations. Yet, the mtDNA mutations account for only a small percentage of the patients with RC disorders. Recently, attention has turned to the analyses of the nuclear genes that are involved in mtDNA biogenesis or RC enzyme complex assembly. RC disease caused by defective nuclear genes may have more deﬁned tissue speciﬁc expression. The objective of this report is to evaluate clinical, biochemical, and molecular spectrum of patients with mutations in nuclear genes that are involved in mtDNA replication or complex assembly. Methods: DNA samples from patients presenting clinical features consistent with previously described mtDNA depletion syndromes were analyzed by direct DNA sequencing of the relevant nuclear genes. Once mutations are identiﬁed, the electron transport chain activities and mtDNA copy numbers in aﬀected tissues, if available, are analyzed. Results: Mutations are identiﬁed in genes responsible for mtDNA depletion syndromes, including POLG1, DGUOK, MPV17, TK2, and TP. It is noted that although mutations in POLG1, DGUOK, and MPV17 genes all cause hepatic mtDNA depletion and early death due to liver failure, initial presentation of patients with POLG1 mutations is usually severe seizures. Patients with DGUOK mutations present liver failure at birth or early months of life. Neurological problems may come later. The number of patients with MPV17 mutations is small, but the majority manifested severe liver failure and death at infancy. Disease onset
of mutations in myopathic form of mtDNA depletion syndrome and mitochondrial neurogastrointestinal encephalomyopathy (MNGIE) caused by TK2 and TP, respectively, is usually in the second decade of life or later, although congenital myopathy may occur with severe TK2 mutations. In patients with mutations, severe RC deﬁciency and marked reduction in mtDNA copy number could be demonstrated in muscle and liver. Conclusion: Mitochondrial RC disorders due to nuclear gene defects may have recognizable clinical features that warrant direct DNA sequencing of the relevant genes. Our results demonstrate that direct sequencing of nuclear genes responsible for various forms of mtDNA depletion syndromes greatly improves the molecular diagnosis of mitochondrial RC disorders. Who is afraid of MS/MS? Myths and challenges of expanded newborn screening. Piero Rinaldo. Biochemical Genetics Laboratory, Mayo Clinic College of Medicine, Rochester, MN 55905, USA. Under the auspices of the HRSA/ACMG recommendations, the implementation of tandem mass spectrometry (MS/MS) in newborn screening has grown dramatically in recent years. To date (December 2006), 46 US states (corresponding to 89% of annual births) have introduced testing by MS/MS of at least one condition. Although this is a reassuring trend, substantial obstacles remain to be overcome in terms of uniformity of testing and analytical performance. The latter is to be expected in a multiplex platform and requires specialized post-analytical interpretive skills to achieve high sensitivity and particularly speciﬁcity (i.e., low false positive rates). The implementation of MS/MS has been hampered by a culture of isolation rather than collaboration, based on the premise that every laboratory should develop their own unique set of data and parameters, most notably cutoﬀ values and reporting algorithms. In this environment, deﬁnition of cutoﬀ values had become an empirical exercise based almost exclusively on the statistical elaboration of data collected on normal subjects, an approach void of any apparent clinical signiﬁcance. This myth has translated in excessive variability of performance metrics, with almost an expectation of poor initial outcome by programs that have the least experience, a reality behind a cautious approach to the selection of conditions being tested for. Selectivity has lead to improper use of the multiple reaction monitoring (MRM) acquisition mode, without proper understanding of the added beneﬁts of a complete proﬁle. Another common myth, based on only anecdotal evidence, is based on the claim that up to 15% of metabolic cases could be missed by the ﬁrst screening, and therefore a routine collection of a second specimen at a later age is required. Similarly, the implementation of 2nd tier tests by MS/MS is perceived as a diﬃcult task because of the need to add a chromatographic component to the basic ﬂow infusion method. This happens despite growing evidence of the substantial beneﬁts derived from assays that target informative analytes (such as methylmalonic acid, homocysteine, succinylacetone, cortisol, and androstenedione) not detectable by ﬁrst tier assays, testing that eﬀectively eliminate the need to recall newborns with inconclusive results of the ﬁrst analysis. Addressing these concerns, and possibly the dispelling of the myths they have lead to, is a critical challenge that could be addressed by fostering a broad collaborative eﬀort, as the one initiated through the HRSA Regional Collaborative projects that has now engaged 30 US states as active participants and an equal number of programs in 16 countries.
Modiﬁers of inborn errors of metabolism: A systems biology approach. Edward RB McCabe. Mattel Children’s Hospital at UCLA, Departments of Pediatrics and Human Genetics, David Geﬀen School of Medicine at UCLA, UCLA Molecular Biology Institute, UCLA Center for Society and Genetics. The reductionist approach to understand the pathogenesis of inborn errors of metabolism (IEMs) has proven to be generally unsuccessful: genotype does not predict phenotype. In an attempt to elucidate the reason for the lack of genotype-phenotype correlation, we identiﬁed factors, including modiﬁer genes and systems dynamics, as possible
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 explanations (Dipple and McCabe, Am J Hum Genet 2000, and Mol Genet Metab 2000; Dipple et al. Mol Genet Metab 2001). Metabolism, like the rest of biology, is composed of highly robust scale-free networks, and modiﬁers are those proteins, including related enzymes and transcription factors, that perturb the network in which the primary gene-product is located. In this presentation, glycerol kinase deﬁciency (GKD) will be used to illustrate our approach to understanding the roles of modiﬁer genes using the tools of systems biology, thus involving a synthetic as opposed to a reductionist approach. We have investigated the Gyk knock-out (KO) mouse in our transcriptomic investigations to elucidate the pathogenesis of GKD. mRNA was prepared from the livers of KO and wild type (WT) mice at day of life (dol) 1 and 3 and, was hybridized to microarrays for gene expression analysis. Network component analysis (NCA) and weighted network analysis (WNA), two matrix-driven algorithms, were utilized to interrogate and reduce the dimensionality of the microarray expression data. NCA measures transcription factor activities (TFAs) and identiﬁes a transcript the expression of which is controlled by a common TF. For example, on dol 3 there were 89 transcripts that were controlled by ﬁve TFs and only one of these ﬁve would have been identiﬁed by the level of expression (MacLennan et al. 2006). With both NCA and WNA, we have identiﬁed diﬀerences in gene expression proﬁles between KO and WT on dol 1, before the KO animals develop metabolic acidemia (Kuwada et al. 2005). Biology is evolving from a qualitative to a quantitative science and systems biology is leading the way in this evolution. While the tools remain rudimentary, they are essential if we are to begin to learn how to reduce high dimensionality data generated by transcriptomics, proteomics and metabolomics–the ‘‘xomics’’–to an understandable, low dimensionality output.
Carrier status as a contributor to complex disorders. Philip A. Wood, Kristina M. Griﬃn, Shaonin Ji, A. Michele Schuler. Department of Genetics, University of Alabama at Birmingham, AL 35294, USA. Monogenic inborn errors of metabolism are often complex disorders. We have used our multiple mouse models of inherited enzyme deﬁciencies of the mitochondrial fatty acid oxidation (FAO) pathway to investigate what we have called synergistic heterozygosity, i.e., two or more heterozygous deﬁciencies that together result in a disease phenotype. This would explain the clinical signs observed in patients with a clinical phenotypes reminiscent of these disorders, but with no clear biochemical features to provide a diagnosis and thus requires a blind and laborious molecular approach. In our mouse models, we are pursuing the idea of testing diﬀerent heterozygous enzyme or transcription factor deﬁciencies and determining the most severe to mildest genetic combinations that appear in the mouse model. We hypothesize that the stoichiometric nature of transcription factors may play out diﬀerently than the catalytic nature of enzyme deﬁciencies when each is in a heterozygous dose. We are developing a phenotype risk assessment for heterozygous combinations that will provide guidance to a more eﬃcient molecular testing of aﬀected children for potential heterozygous deﬁcient combinations. That is, there are likely severe, as well as harmless heterozygous combinations that can be estimated in the many mouse models available for deﬁciencies in the mitochondrial FAO pathway. Our initial series consisted of combining heterozygous mutations for very long-chain acyl-CoA dehydrogenase (VLCAD+/)), long-chain acyl-CoA dehydrogenase (LCAD+/)), and short-chain acyl-CoA dehydrogenase (SCAD+/)) as double and triple heterozygous deﬁciencies. We found in all three groups that 33% developed fatal hypothermia in the metabolic challenge of a cold tolerance test at 4 C; whereas the single heterozygous controls and wild-types showed no eﬀects. We recently tested the combination of the global FAO transcription factor peroxisomal proliferator-activated receptor-a (PPARa +/)) deﬁciency combined with LCAD+/) deﬁciency, which showed no synergistic eﬀect. Currently in progress are combinations of carnitine palmitoyltransferase-1a (CPT-1a+/) liver isoform) combined with LCAD+/) or CPT-1b+/) (muscle isoform) to test the potential for
their deleterious combinations. Additional enzyme deﬁciency combinations are planned with the overall goal of testing each heterozygous deﬁciency with LCAD+/) deﬁciency because LCAD is a severe deﬁciency in the mouse, yet is viable as a homozygous mutant, and it also models human VLCAD deﬁciency very well. Finally, we would speculate that similar synergistic heterozygous states could be important in more common complex traits involving dysfunctional fatty acid metabolism such as insulin resistance, metabolic syndrome, and type 2 diabetes.
Multifunctional regulators of mitochondrial iron balance. Grazia Isaya. Departments of Pediatric and Adolescent Medicine and Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA. The ability to incorporate iron into iron–sulfur clusters (ISC) and heme is essential for the activity of respiratory chain complexes and many other vital enzymes. However, ferrous iron (Fe2+), which is the biologically active form of the metal, can be readily oxidized to the ferric form (Fe3+) with a drastic reduction in iron bioavailability. In addition, Fe2+ can interact with hydrogen peroxide, a byproduct of respiration, and catalyze hydroxyl radical production, ultimately leading to widespread oxidative damage to cellular membranes, proteins, and DNA. Thus, molecular mechanisms that overcome the limited bioavailability and potential toxicity of iron are critically important. Frataxin is a multifunctional mitochondrial protein that not only promotes the biogenesis of heme and ISC but also detoxiﬁes surplus redox-active iron. A P 70% reduction in the levels of frataxin is responsible for Friedreich ataxia, an autosomal recessive mitochondrial disease characterized by progressive neurodegeneration, hypertrophic cardiomyopathy, and diabetes mellitus with onset in childhood. Partial defects in frataxin are likely to inﬂuence overall mitochondrial ﬁtness and contribute to the pathophysiology of other, genetically determined or age-related, neurological and cardiac disorders of mitochondrial origin. Dihydrolipoamide dehydrogenase (DLD) is a mitochondrial enzyme essential for energy metabolism. Conditions that destabilize the DLD homodimer enable the protein to also function as a protease, which can initiate degradation of frataxin. Loss of DLD activity is linked to a severe disorder of infancy with failure to thrive, hypotonia, and metabolic acidosis due to inactivation of all three a-ketoacid dehydrogenases. Certain DLD mutations can simultaneously induce the loss of this enzyme’s metabolic activity and the gain of its moonlighting proteolytic activity. The latter activity could contribute to the metabolic derangement associated with DLD deﬁciency or modify the pathophysiology of Friedreich ataxia and other mitochondrial conditions. [Funded by NIA/NIH AG15709; AHA 0650007Z].
Modiﬁers of electron transport: coenzyme Q10 deﬁciency. Michio Hirano, Catarina Quinzii, Luis Carlos Lo´pez, Ali B. Naini, Salvatore DiMauro. Columbia University Medical Center, 630 West 168th Street, P&S 4-443, New York, NY 10032, USA. Ubiquinone (coenzyme Q10 or CoQ10) is a lipid-soluble component of virtually all cell membranes and has multiple metabolic functions. Deﬁciency of CoQ10 (MIM 607426) is an autosomal recessive syndrome with a clinical spectrum that encompasses four major phenotypes: (1) encephalomyopathy characterized by the triad of recurrent myoglobinuria, brain involvement and ragged-red ﬁbers; (2) severe infantile multisystemic disease; (3) cerebellar ataxia; and (4) isolated myopathy. These diverse clinical presentations suggest genetic heterogeneity, which may be related to the multiple steps in CoQ10 biosynthesis. Patients with all forms of CoQ10 deﬁciency have shown clinical improvements after initiating oral CoQ10 supplementation. Thus, early diagnosis is of critical importance in the management of these patients. In a family with three siblings and a cousin aﬀected by cerebellar ataxia and CoQ10 deﬁciency in muscle, we identiﬁed a mutation in APTX, which had previously been identiﬁed as a cause of ataxia oculomotor apraxia 1 (AOA1) (Quinzii et al. Neurology 2005;64:539–41). APTX encodes aprataxin, a protein thought to be involved in single-strand break repair in the nucleus; therefore, CoQ10
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
deﬁciency is secondary in this family. This year, we reported the ﬁrst molecular defect causing the infantile form of primary human CoQ10 deﬁciency (Quinzii et al. Am J Hum Genet 2006;78:345–9) in two North African siblings originally reported by Salviati and colleagues (Neurology 2005;65:606–8). The proband presented with an encephalomyopathy and nephrotic syndrome and his muscle biopsy revealed CoQ10 deﬁciency. In contrast, the younger sibling had nephrotic syndrome only. Both siblings harbored mutations in COQ2 encoding para-hydroxybenozoate-polyprenyl transferase and improved with CoQ10 supplementation. In a German child with infantile CoQ10 deﬁciency presenting as Leigh syndrome and nephotic syndrome, we identiﬁed compound heterozygous mutations in PDSS2 encoding decaprenyl diphosphosphate synthase subunit 2 (Lo´pez et al. Am J Hum Genet, 2006;79:1125–9). Our studies have demonstrated that deﬁciency of CoQ10 can be primary or secondary and that defects in CoQ10 biosynthesis are genetically heterogeneous. The availability of genetic testing will allow for a better understanding of the pathogenesis of this disease and early initiation of therapy (even presymptomatically in siblings of patients) in this otherwise life-threatening infantile encephalomyopathy.
Babies and VLCAD newborn screening. Arnold W. Strauss. Department of Pediatrics, Vanderbilt Children’s Hospital, USA. Tandem mass spectrometry (MS/MS) newborn screening (NBS) has revolutionized the diagnosis of long chain fatty acid oxidation disorders, including very long chain acyl-CoA dehydrogenase (VLCAD) deﬁciency. I will discuss the relevance of previous genotype-phenotype correlations in symptomatic patients relative to mutational analysis in asymptomatic NBS positive patients, some the pitfalls of NBS especially as related to detection of carriers/simple heterozygotes, correlation of genotype with additional testing such as immunoblot quantiﬁcation of VLCAD antigen expression, and predictive outcomes. NBS documents that VLCAD deﬁciency is more common than previously recognized and has allowed delineation of ‘‘common’’ mutations in diﬀerent populations. The usefulness of animal models in understanding pathogenesis and complications of VLCAD deﬁciency will also be presented.
Survival of patients with urea cycle disorders following treatment of hyperammonemia with intravenous sodium phenylacetate and sodium benzoate. G.M. Ennsa, S.A. Berryb, G.T. Berryc, W.J. Rheadd, A. Ham-
oshe. aDepartment of Pediatrics, Stanford University, 300 Pasteur Drive, H-315, Stanford, CA 94305-5208, USA; bDepartment of Pediatrics, University of Minnesota, 420 Delaware Street, SE, Minneapolis, MN 55455, USA; cDepartment of Pediatrics, Thomas Jeﬀerson University, 1025 Walnut Street, Philadelphia, PA 19107-5083, USA; dDepartment of Pediatrics, Children’s Hospital of Wisconsin, 9000 W Wisconsin Avenue, Milwaukee, WI 53226, USA; eDepartment of Pediatrics and Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 600 North Wolfe Street, Baltimore, MD 21287-3914, USA. Objective: A combination of intravenous sodium phenylacetate and sodium benzoate has been shown to be eﬀective in lowering plasma ammonium levels and improving survival in small cohorts of patients with historically lethal urea cycle enzyme defects. The objective of this report is to document the clinical response of a large cohort of urea cycle patients to alternative pathway therapy for the treatment of hyperammonemia. Methods: We report the results of a 25-year, open-label, uncontrolled study of sodium phenylacetate and sodium benzoate therapy in 299 patients with urea cycle disorders who experienced 1181 episodes of acute hyperammonemia. The 93 neonates (94 episodes) and 206 patients >30 days old (1087 episodes) in the cohort comprise the single largest database of urea cycle disorder patients reported to date. Results: Overall patient survival was 84% (250 of 299 patients). Survival of hyperammonemic episodes was 96% (1142 of 1191 episodes). Patients >30 days old were more likely to survive a hyperammonemic episode compared to neonates (survival rates 98% and 73%, respectively, P < 0.001). Patients >12 years old (n = 93 patients, 437 episodes) were most likely to survive a hyperammonemic episode (survival rate 99%, P < 0.001). The majority (81%) of patients who were comatose on admission survived, although survival of hyperammonemic episodes was substantially lower for comatose males with ornithine transcarbamylase deﬁciency. Patients <30 days old with a peak ammonia level >1000 lmol/L were least likely to survive a hyperammonemic episode (38% episode survival) (P < 0.001). For all episodes in which both a baseline ammonium level and postbaseline level were known (n = 582), median ammonia level fell from 185.0 to 36.0 lmol/L at the last assessment (–79% change from baseline). Conclusions: Prompt recognition and treatment with combined sodium phenylacetate and sodium benzoate, in conjunction with other therapies, such as intravenous arginine hydrochloride and the provision of adequate calories to prevent catabolism, eﬀectively lowers plasma ammonium levels and results in survival in the overwhelming majority of urea cycle disorder patients.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Travel Award Recipient Oral Presentations 1 2 3 4 5
Sara S. Cathey Kristina Cusmano-Ozog David Dimmock Marni J. Falk Eric Goetzman
6 Miao He 7 Enriko Daniel Klootwijk 8 Linda M. Lukose 9 10 11 12
Susan Pattison Manshu Tang Andrea Wierenga Klaas J. Wierenga
Exploring mucolipidosis II and III Cobalamin C disease identiﬁed by expanded newborn screening: the California experience Citrin deﬁciency: apparent founder mutations in the French Canadian population Metabolic pathway expression proﬁling in C. elegans mitochondrial respiratory chain mutants Expression and characterization of mutations in very long-chain Acyl-CoA dehydrogenase using a prokaryotic system A possible new disorder of cholesterol biosynthesis involving the 4a-methylsterol-4-demethylase complex N-Acetylmannosamine treatment rescues GNE knock-in mice from severe neonatal glomerular hematuria and podocytopathy. Insights for hereditary inclusion body myopathy Acute presentation of beta ketothiolase deﬁciency: an illustrative case for glucose administration in pediatric advanced life support Multidisciplinary study of in utero presentation of fetal GM1 gangliosidosis at 17 weeks gestation Oxidative and endoplasmic reticulum stress in novel isogenic cell models for classic galactosemia The eﬀect of phenylalanine and tyrosine intake on tetrahydrobiopterin (BH4) response in phenylketonuria (PKU) Development of a high-throughput assay for the identiﬁcation of small molecule inhibitors of human galactokinase
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
1. Exploring Mucolipidosis II and III. Sara Cathey, Michael Friez, Tim Wood, Karisa Eaves, Jules Leroy. Greenwood Genetic Center, USA. Introduction: Mucolipidosis II and IIIA are rare, autosomal recessive, allelic disorders of lysosomal enzyme targeting due to deﬁciency of UDPN-acetylglucosamine phosphotransferase. The enzyme is encoded by two genes, GNPTA and GNPTG. GNPTA mutations lead to ML II and ML IIIA. In order to more fully understand these disorders, we have undertaken a project to evaluate aﬀected individuals molecularly, enzymatically, radiographically, and clinically. Methods: GNPTA has been sequenced in 47 families from around the world with probands clinically diagnosed with ML II or III. Lysosomal enzymes have also been measured in this large group of probands and their carrier parents. Clinical information has been obtained for 35 families. Fifteen families from across the United States and Canada traveled to the Greenwood Genetic Center in July, 2006, for thorough clinical evaluations, which included physical examinations, radiographic evaluations, and intelligence testing. Results: Analyzing plasma lysosomal enzymes (b-hexosaminidase, b-glucuronidase, b-galactosidase, a-fucosidase) on this large group of aﬀected individuals allows a preliminary stratiﬁcation of patients based on enzyme elevations. Molecular analysis of GNPTA establishes a strong genotypephenotype correlation for the majority of patients. Patients with classic ML II, the clinically more severe disorder, are compound heterozygotes with two diﬀerent frameshifts, compound heterozygotes with a frameshift and a nonsense mutation, or homozygotes for a frameshift. Patients with classic ML IIIA, the milder disorder, are compound heterozygotes with frameshift and splice changes, nonsense and splice changes, or nonsense and missense mutations. A few individuals fall into an intermediate category with a frameshift and a nonsense mutation, or a splice-site change with a missense mutation. Analysis of extensive clinical data allows appreciation of wide clinical variability within each disorder, particularly in regard to developmental achievements. Patients with ML II have signs of the disease prenatally or at birth, signiﬁcant growth retardation and developmental delay, and early death. Patients with ML IIIA may not have recognized signs of disease until mid-childhood or later, have moderate deﬁciency of stature growth, and have mild to moderate cognitive impairment. Dysostosis multiplex is seen in both disorders. The pelvic dysplasia that develops with ML IIIA is radiographically distinct. Conclusions: A large collection of clinical and laboratory data on individuals with ML has been established. There is strong genotypephenotype correlation. Increased awareness of the clinical manifestations of these disorders may help avoid misdiagnosis. 2. Cobalamin C disease identiﬁed by expanded newborn screening: The California experience. K. Cusmano-Ozoga, F. Loreyb, S. Levineb, M. Martinc, E. Nicholasc, S. Packmanc, D.S. Rosenblattd, S.D. Cederbaume, T.M. Cowana,f, G.M. Ennsa. aDepartment of Pediatrics, Division of Medical Genetics, Stanford University, Stanford, CA, USA; bCalifornia Department of Health Services, Genetic Disease Branch, USA; cDepartment of Pediatrics, Division of Medical Genetics, University of California, San Francisco, CA, USA; dDepartment of Human Genetics and Division of Medical Genetics, Department of Medicine, McGill University, Montreal, Que., Canada; eDepartment of Pediatrics, David Geﬀen School of Medicine, University of California, Los Angeles, CA, USA; fDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, USA. Cobalamin C (cblC) disease, the most common inborn error of vitamin B12 metabolism, is characterized by elevated levels of methylmalonic acid (MMA) and homocysteine. Newborns with cblC disease can be identiﬁed by expanded newborn screening (NBS) with elevations of C3-carnitine. Although thought to be a rare condition with an estimated incidence of 1:200,000 births, we have identiﬁed a surprisingly large number of patients with cblC disease since the implementation of expanded NBS in California. Of the over 737,000 newborns screened since July 2005, 11 had biochemical ﬁndings consistent with cblC disease with an estimated incidence of cblC disease of 1 in 67,000. Eight of these cases are Hispanic, and the other 3 are of Middle Eastern, Asian or Caucasian descent. Given that 51% of all births in California are of Hispanic heritage, we estimate
the prevalence of cblC in the Hispanic population to be 1 in 46,000. At the time of NBS, all but one of the 11 cases had elevated C3 levels (range 6.5– 13.1 lmol/L; mean 9.6 ± 2.56). The C3 screening cut-oﬀ was initially set at 9.25 lmol/L, but this was lowered to 6.5 following the identiﬁcation of a patient, later conﬁrmed to have cblC disease, with C3 of 6.5 lmol/L and an elevated C3/C2 of 0.38. The C3/C2 ratio was elevated in all cases (range 0.29–0.45; mean 0.36 ± 0.06; cut-oﬀ <0.25). Follow-up conﬁrmatory testing revealed elevated levels of serum MMA (range 26–254 lmol/L; controls <0.3), and homocysteine (range 26.8–250 lmol/L; controls <14). Four of the individuals have been conﬁrmed by ﬁbroblast complementation studies. Screening of the MMACHC gene for common mutations has been preformed in three individuals. One individual is homozygous for 482G > A (R161Q). Two individuals have one identiﬁable mutation to date [271dupA (R91KfsX14) and 609G > A (W203X)]. Further complementation analysis and DNA sequencing is ongoing. These studies demonstrate an unexpectedly high incidence of cblC disease identiﬁed by NBS, particularly in the Hispanic population. The discrepancy between the population frequency derived by NBS and that based on clinically presenting individuals is unclear at this time; future studies on genotype/ phenotype correlations may help to answer this question. 3. Citrin deﬁciency: Apparent founder mutations in the French Canadian population. David Dimmocka, Bruno Marandab, Rachel Laframboiseb, Qing Zhanga, Jing Wanga, Cavatina Truonga, Eric Schmitta, Fernando Scagliaa, Lee-Jun Wonga. aMedical Genetics Laboratories, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; bService de Ge´ne´tique Me´dicale, De´partement de Pe´diatrie, De´partement de Me´decine, Centre Hospitalier Universitaire de Que´bec (CHUQ), Que´., Canada G1V 4G2. Citrin Deﬁciency is an inborn error of metabolism characterized by two diﬀerent age dependent clinical phenotypes: neonatal intrahepatic cholestasis (NICCD, MIM#605814) and adult-onset type II citrullinemia (CTLN2, MIM#603471). It is caused by mutations in the SLC25A13 gene that encodes an aspartate glutamate carrier. Severe intrahepatic cholestasis with fatty liver is the most common presenting feature reported in the Japanese series. Conversely, the North European patient we have described presented with later onset failure to thrive. Here, we report two cases with the same, previously undescribed nonsense mutations, ascertained after detection of elevated citrulline on urinary newborn screening. The probands, both French Canadian, are unrelated and from diﬀerent towns suggesting the possibility of founder mutations. One patient had a prolonged period of signiﬁcant liver dysfunction associated with protein restriction for suspected citrullinemia type 1. This dysfunction resolved at approximately one year of age after the initiation of a high protein, low carbohydrate diet. The other subject, in whom dietary therapy was started at 4 months of age, has had a more benign course. These cases illustrate the importance of considering citrin deﬁciency in patients of all ethnicities with elevated citrulline. Similarly, they illustrate the importance of whole gene sequencing when a disorder is suspected outside of the population where common mutations have been described. The availability of dietary therapy for this condition, and the signiﬁcant worsening seen if protein is restricted make it vital to distinguish this condition from argininosuccinate synthetase deﬁciency. This makes test development a signiﬁcant consideration as expanded newborn screening becomes more prevalent. The true natural history of this disorder remains to be discovered. 4. Metabolic pathway expression proﬁling in C. elegans mitochondrial respiratory chain mutants. M.J. Falka, Z. Zhengb, J.R. Rosenjackd, M.M. Sedenskyd,e, M. Yudkoﬀ c, P.G. Morgand,e,f. aDivisions of Human Genetics, The Children’s Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA 19104, USA; bDivisions of Bioinformatics, The Children’s Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA 19104, USA; cDivisions of Metabolism, The Children’s Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA 19104, USA; dDepartment of
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 Anesthesiology, University Hospitals of Cleveland and CASE School of Medicine, Cleveland, OH 44106, USA; eDepartment of Genetics, University Hospitals of Cleveland and CASE School of Medicine, Cleveland, OH 44106, USA; fDepartment of Pharmacology, University Hospitals of Cleveland and CASE School of Medicine, Cleveland, OH 44106, USA. Objective: Mitochondrial structure and function is highly conserved between humans and C. elegans. The use of C. elegans as a model of mitochondrial dysfunction permits insight into the phenotypic eﬀects and cellular adaptations that occur as a consequence of genetic alterations that cause human disease. Methods: We applied the technique of gene set enrichment analysis to characterize genome-wide expression proﬁles of hypomorphic C. elegans mutants in various nuclear-encoded subunits of respiratory chain complexes I, II, and III. This analyis detects concordant changes among clusters of genes that comprise deﬁned metabolic pathways. Results: Preliminary results indicate that respiratory chain mutants signiﬁcantly upregulate several key pathways, including ascorbate metabolism, the g-glutamyl pathway of glutathione synthesis, glycolysis, and the TCA cycle. Replicate microarray expression experiments using the Aﬀymetrix platform are in progress to conﬁrm these preliminary ﬁndings. In addition, we are preparing metabolomic proﬁles of these C. elegans mutants to conﬁrm expression analysis ﬁndings at the protein level. Such proﬁling includes stable isotopic/mass spectrometric studies of precursorproduct relationships, as well as measurements of ﬂux through speciﬁc pathways. Conclusions: Detection of consistent changes in the pattern of nuclear gene expression in genetic models of mitochondrial dysfunction will not only provide insight into disease mechanism, but may also highlight potential areas of therapeutic intervention and enable development of a diagnostic screen for mitochondrial dysfunction based upon gene pathway expression patterns. 5. Expression and characterization of mutations in very long-chain AcylCoA dehydrogenase using a prokaryotic system. E.S. Goetzman, Y. Wang, A.-W. Mohsen, M. He, B.K. Ninness, J. Vockley. Department of Pediatrics, School of Medicine, University of Pittsburgh, Children’s Hospital of Pittsburgh, Pittsburgh, PA 15213, USA. Very long-chain acyl-CoA dehydrogenase (VLCAD) catalyzes the ﬁrst enzymatic step in the mitochondrial b-oxidation of fatty acids 14–20 carbons in length. Genetic deﬁciency of VLCAD manifests as either a severe early onset form with hypoketotic hypoglycemia, dicarboxylic aciduria, liver dysfunction, and cardiomyopathy or a milder late-onset form without cardiomyopathy. VLCAD is distinguished from matrixsoluble acyl-CoA dehydrogenases by its unique C-terminal domain, homodimeric structure, and localization to the inner mitochondrial membrane. However, the biochemical characterization of VLCAD has been limited due to diﬃculties with prokaryotic expression. We have for the ﬁrst time expressed and puriﬁed VLCAD using a bacterial system. Recombinant VLCAD had similar biochemical properties to those reported for native VLCAD. The bacterial system was then used to study six previously described disease-causing missense mutations including the two most common mild mutations (T220M, V243A), a mutation leading to the severe disease phenotype (R429W), and three mutations in the Cterminal domain (A450P, L462P, and R573W). Enzyme activity was measured in E. coli crude extracts after expression of the six mutants. The common mild mutations T220M and V243A both had residual activity (3% and 22% of wild-type, respectively). Mutant R429W, which has been associated with the severe disease phenotype in four patients, had trace activity (0.2% of wild-type) while R573W was a null mutation. Of particular interest was the ﬁnding that the A450P and L462P bacterial extracts had normal or increased amounts of VLCAD antigen and activity. In the pure form L462P had roughly 30% of wild type activity while A450P was normal. Using computer modeling both mutations were mapped to a charged surface of VLCAD that we postulate interacts with the mitochondrial membrane. To test whether the A450P and L462P mutations interfere with membrane binding the puriﬁed VLCAD proteins were incubated with mitochondrial membranes and ultra-centrifuged. The pellet and supernatant were assayed for enzymatic activity. For wild-type
VLCAD 80% of activity was recovered in the membrane pellet fraction compared to 10% and 4% for the A450P and L462P mutant proteins, respectively. These data support our hypothesis that the C-terminus is important for membrane association and suggest that mutations A450P and L462P may cause disease by interfering with localization of VLCAD to the inner mitochondrial membrane. In summary, the bacterial expression system developed here will signiﬁcantly advance our understanding of both the clinical aspects of VLCAD deﬁciency and the basic biochemistry of the enzyme. 6. A possible new disorder of cholesterol biosynthesis involving the 4-amethylsterol-4-demethylase complex. M. Hea, L.E. Kratzb, L. Ferrisa, R.I. Kelleyb, J. Hoovera, K.M. Gibsona, J. Vockleya. aChildren’s Hospital of Pittsburgh, University of Pittsburgh, School of Medicine, Pittsburgh, PA, USA; bThe Kennedy Krieger Institute, Baltimore, MD, USA. Cholesterol is a key component of cell membranes and the immediate precursor of all known steroid hormones and bile acids. In the past 10 years, seven disorders involving enzyme defects in post-squalene cholesterol biosynthesis have been identiﬁed. In this study, we report a new disorder of cholesterol biosynthesis. The patient is a 15-year-old girl with short stature, microcephaly, developmental delay, and congenital cataracts. Her brain MRI scan shows a small area of gliosis in the left parietal lobe, but is otherwise normal. Her most dramatic physical ﬁnding is a severe, scaling, psoriasiform dermatitis over most of her body, sparing only small areas on her ﬁngers. No other family members are aﬀected. She has persistently low levels of cholesterol, LDL, HDL, with normal triglycerides and VLDL levels, which, in combination with the psoriasiform dermatitis, suggested a disorder of cholesterol biosynthesis. Plasma and skin sterol analysis showed 20–500-fold elevations of 4-methyl and 4,4¢-dimethylsterols, pointing to an abnormality of the 4-a-methylsterol-4-demethylase complex. Further mass spectral analysis conﬁrmed the identity of 4-amethylcholest-8-en-3-b-ol, 4-a-methylcholest-7-en-3-b-ol, 4,4-dimethylcholest-8-en-3-b-ol, lanosterol, and dihydrolanosterol. Four genes are known to be involved in the 4-a-methylsterol-4-demethylase complex, NSDHL, HSD17B7, SC4MOL, and a gene encoding a ‘‘scaﬀolding protein’’ homolog of yeast ERG28. Mutations in the X-linked NSDHL gene cause CHILD syndrome, in which the elevation of 4-methyl sterols may contribute to the development of psoriasiform skin lesions in many CHILD patients. Because the absence of 4-carboxysterol and 3-ketosterol derivatives in our patient’s samples indicated a block at the level the sterol C4-methyloxidase, SC4MOL, molecular studies of SC4MOL were carried out in cDNA from patient ﬁbroblasts. These identiﬁed two mutations, T519A and A731G. Both mutations lead to nonconservative amino acid changes, H173Q and Y244C, respectively, which are not present in public human SNP databases and are highly conserved across evolution. H173 is predicted to be in the active site of the second metal binding domain of the methyl oxidase, while Y244 is near its third metal-binding domain, suggesting that the mutations are functionally signiﬁcant. The unique clinical and biochemical proﬁle of this new disorder will provide valuable insights into the role of sterol biosynthesis in human development. 7. N-Acetylmannosamine treatment rescues GNE knock-in mice from severe neonatal glomerular hematuria and podocytopathy: Insights for hereditary inclusion body myopathy. E. Klootwijk, I. Manoli, B. Galeano, M.S. Sun, C. Ciccone, W. Bond, D. Darvish, D. Krasnewich, W.A. Gahl, M. Huizing. MGB, NHGRI, NIH, Bethesda, MD, USA; HIBM Research Group, Encino, CA, USA. Hereditary Inclusion Body Myopathy (HIBM) is an autosomal recessive, adult onset neuromuscular disorder characterized by slowly progressive muscle atrophy and weakness. The responsible gene is GNE, which encodes the bifunctional enzyme UDP-N-acetylglucosamine (GlcNAc) 2-epimerase/N-acetylmannosamine (ManNAc) kinase (GNE/ MNK) that catalyzes the ﬁrst two committed, rate-limiting steps in the biosynthesis of sialic acid (SA). Decreased SA production may interfere with sialylation of muscle glycoproteins such as a-dystroglycan. We created and characterized GNE knock-in mice harboring the Persian–
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Jewish founder GNE mutation, M712T. Homozygous ()/)) mutant mice did not survive beyond postnatal day 3 (P3). At P2, GNE-epimerase activity in )/) mouse skeletal muscle was 20% of normal, but histological examination showed no muscle pathology. Rather, the )/) mice showed glomerular hematuria, proteinuria and a severe podocytopathy consisting of eﬀacement of podocyte foot processes and reduced sialylation of the major podocyte sialoprotein, podocalyxin. As a treatment option, we administered N-acetylmannosamine (ManNAc) per os to breading and pregnant mothers until the weaning of their newborn pups. ManNAc feeding resulted in survival beyond P3 in 43% of the )/) pups. Surviving )/) mice were smaller than their littermates, but appeared healthy otherwise. They exhibited improved kidney histology with signiﬁcant restoration of podocyte foot processes and increased sialylation of podocalyxin. In addition, their muscle GNE-epimerase activities increased to 50% of normal, and brain tissues showed increased sialylation of PSA-NCAM. It remains unclear if the surviving )/) mice will develop a muscular pathology later in life mimicking the adult onset of myopathic symptoms in HIBM. These ﬁndings establish the GNE/MNK M712T knock-in mouse as the ﬁrst genetic model of podocyte injury due to hyposialylation. The increased survival of )/) mice after ManNAc administration, along with the increased GNE activity, improved kidney pathology and increased sialylation of glycoproteins, such as podocalyxin and PSA-NCAM, strongly support evaluation of ManNAc as a treatment for HIBM and/or various podocytopathies. 8. Acute presentation of b-ketothiolase deﬁciency: An illustrative case for glucose administration in pediatric advanced life support (PALS). L. Lukosea, T. Markellob. aNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA; bDivision of Medical Genetics and Metabolism, Children’s National Medical Center, Washington, DC, USA. Objective: To illustrate the potential beneﬁt of early glucose administration for patients treated by emergency caregivers, we present a case of b-ketothiolase deﬁciency in metabolic crisis. A previously healthy 12month-old female infant developed malaise and presented to a rural emergency room with vomiting, listlessness, fever, and labored breathing. Classical (Guthrie spot) newborn screening had been negative. Arterial blood gas analysis and electrolytes revealed metabolic acidosis with an anion gap. Hyperammonemia was present. Urinalysis revealed ketones. Tachycardia was present without hypoxia. The patient was managed for shock by the current pediatric advanced life support (PALS) protocol, including intubation, and intraosseous ﬂuid resuscititaion. She did not receive glucose in the initial intravenous ﬂuids. Sodium bicarbonate was given to correct acidosis. She was transferred to a regional hospital and treated for persistent acidosis with hemodialysis. During dialysis she had a cardiopulmonary arrest and later developed a femoral artery thrombosis. She was then placed on a high glucose infusion rate, with improvement in the acidosis and glucose levels. After resuscitation, she was transferred to a tertiary care facility where she made a rapid clinical improvement. Urine organic acid analysis revealed elevated tiglylglycine and 2-methyl 3hydroxybutyric acid. b-Ketothiolase deﬁciency was conﬁrmed by enzyme analysis on skin ﬁbroblasts. Newborn screening will detect many more patients with metabolic disease who will be presenting to emergency rooms in greater numbers with metabolic crises. The early administration of glucose is becoming a standard of care for metabolic patients, many of whom will be critically ill at the time of presentation. The PALS revision we are suggesting also includes a ‘‘metabolic pathway’’ for patients with hypoglycemia and acidosis. We advocate for co-administration of 1.5 maintenance infusion of 10% dextrose along with a bolus of normal saline during the initial management of critically ill metabolic patients. Conclusions: We suggest possible alterations in the PALS curriculum, including a recommendation for the early co-administration of intravenous glucose to improve outcomes in critically ill patients who may have an undiagnosed metabolic disorder. Unanticipated consequences of this proposal warrant caution. While rapid consultation with a metabolic specialist is always desirable, appropriate resuscitation training will lead to greater awareness
among ﬁrst responders of the importance of glucose administration in the critically ill metabolic infant and child. 9. Multidisciplinary study of in utero presentation of fetal GM1 gangliosidosis at 17 weeks gestation. S. Pattison, J.M. Bourgeois, A.A. Li, M.J.M. Nowaczyk, M.A. Potter. McMaster University, Department of Pathology and Molecular Medicine, Hamilton, Ont., Canada. The lysosomal storage disorders GM1-gangliosidosis and Morquio B syndrome result from mutations in the lysosomal b-galactosidase gene. The variant 67 kDa ‘‘short form’’ of b-galactosidase is present on the cell surface and is now thought to be the previously unidentiﬁed 67 kDa elastin/laminin binding protein (EBP). These new ﬁndings suggest a functional and structural requirement of b-galactosidase gene product independent of the lysosomal hydrolytic activity. We report here the ﬁrst composite of clinical, molecular and pathological examination of a previously unpublished b-galactosidase mutation p.L108P associated with severe GM1 gangliosidosis, presenting in utero at 17 weeks gestation. Methods: All human tissues were collected and handled in accordance with the policies of the McMaster University Research Ethics Board. Fetal tissues were harvested from a 16 week, 6 day gestation age therapeutically aborted GM1 gangliosidosis-aﬀected fetus. Live cell cultures were established for several fetal ‘‘elastic tissues’’ and brain stem. Select pathology staining and biochemical analysis was made from harvested and preserved tissues Results: The fetus was the third aﬀected pregnancy and fourth aﬀected child of a consanguineous Cambodian couple followed clinically by the authors. The probands were twin sisters born by Caesarian section at 31 weeks gestational age. The probands and one subsequent term sibling followed a progressively morbid course with death at 2-3 years of age, typical for infantile GM1 gangliosidosis. Marked biochemical abnormalities included elevation (>1000 lmol/L) of blood alkaline phosphatase activity (bone speciﬁc), abnormal urine oligosaccharides consistent with GM1 gangliosidosis and leukocyte b-galactosidase activity was determined as 3 nmol/h/mg protein (normal 38–104). Clinical features included ﬂat nasal bridge, mild frontal bossing, gum/palate/frenulum hypertrophy, rhizomelic limb shortening and moderate hepatosplenomegaly. Skeletal survey showed kyphosis, shortening of the radius, ulna, tibia, and ﬁbula with deformity of both knees and generalized osteopenia. Pathological changes consistent with lysosomal storage in a variety of tissues were already evident in the 17-week-old fetus. In this report we also address the in utero presentation of elastogenesis of the GM1 gangliosidosis aﬀected fetus. Conclusions: This is the ﬁrst report of an early second trimester fetus with GM1 gangliosidosis describing the pathological, molecular and biochemical details. Declarations and Acknowledgements S. Pattison is a ﬁrst year resident of the Canadian College of Medical Geneticists Biochemical Genetics Training Program. She is engaged in a three year training fellowship under Dr. Murray Potter, MD, FRCPC, FCCMG. The objective of her training program is to develop her diagnostic laboratory skills in the context of inherited metabolic disease, and within clinical teams as an inherited metabolic disease laboratory/ clinical diagnosis consult. S. Pattison is a 2006–2008 recipient of the Ontario Ministry of Health and Long Term Care, CCMG training fellowship. M. Potter is the Head of Biochemical Genetics and Assistant Professor of Pathology and Molecular Medicine at McMaster University A. Li is a Research Associate of Pathology and Molecular Medicine at McMaster University. J. Bourgeois and M. Nowaczyk are Associate Professors of Pathology and Molecular Medicine at McMaster University and are a pathologist and clinical geneticist, respectively. 10. Oxidative and endoplasmic reticulum stress in novel isogenic cell models for classic galactosemia. Manshu Tanga,b, Tatiana I. Slepaka, Louis J. Elsasa, Kent Laia. a The Dr. John T. Macdonald Foundation Center for Medical Genetics, Department of Pediatrics; The Leonard M. Miller School of Medicine, University of Miami, Miami, FL 33101, USA; bDepartment of Biochemistry and Molecular Biology, The Leonard M. Miller School of Medicine, University of Miami, Miami, FL 33101, USA.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 Deﬁciency of galactose-1-phosphate uridyltransferase (GALT), an enzyme in the evolutionarily conserved Leloir pathway, can lead to a potentially lethal metabolic disorder called Classic Galactosemia. Although the biochemical basis of this disease is well characterized, its pathophysiology is poorly understood at the molecular level. To investigate the molecular basis of galactose intoxication in GALT deﬁciency, we developed novel, isogenic cell models by restoring GALT activity through lentiviral transfer of the GALT gene in human diploid GALTdeﬁcient dermal ﬁbroblasts. We determined, through comparing GALT activity and the concentration of galactose metabolites, that the eﬃciency of lentiviral infection reached over 90%. Next, we compared gene expression proﬁles between the GALT-deﬁcient and GALT-reconstituted isogenic cells. We showed, for the ﬁrst time, that galactose intoxication in the GALT-deﬁcient cells led to a 2-fold or higher up-regulation of a set of genes involved in endoplasmic reticulum (ER) stress response. Such molecular changes were further conﬁrmed by Western Blot analyses of BiP (a key ER stress sensor), GRP94 (an ER chaperone), XBP1 and PERK (activators of ER stress response). More importantly, the same molecular changes were not seen when the GALT-deﬁcient cells were starved in hexose-free medium, illustrating the speciﬁcity of this stress response. We have found at least three mechanisms that might activate ER stress response in the GALT-deﬁcient cells. First the accumulation of gal-1-p inhibits UTP dependent glucose-1-P pyrophosphorylase and reduces UDPglu and UDPgal concentrations. This results in decreased posttranslational processing and unfolded proteins. Second,we found that gal-1-p competes with inositol monophosphate and lowers the KM of human inositol monophosphatase (hIMPase1) 3-fold. This potentially reduces inositol production and inositol-1,4,5-triphosphate (IP3) release from phosphatidylinositides. To support this hypothesis, we discovered via ex vivo calcium imaging that response to bradykinin activation of Gq-coupled receptors in galactose-intoxicated cells resulted in a 4-fold decrease in Ca2+ release without any change in IP3 receptor abundance. This suggested the reduced level of IP3 in the galactose-poisoned cells. Lastly, galactose intoxication of GALT-deﬁcient ﬁbroblasts also resulted in 2.5fold higher level of reactive oxygen species (ROS), which was signiﬁcantly lowered in the presence of antioxidants. In conclusion the detrimental eﬀects of GALT deﬁciency in this model system results from accumulation of, galactose-1-Phosphate that impairs posttranslational processing, alters calcium homeostasis, increases ROS and leads to ER stress.
11. The eﬀect of phenylalanine and tyrosine intake on tetrahydrobiopterin (BH4) response in phenylketonuria (PKU). A. Wierengaa, D. Velazqueza, G. Bhatiab, K. Matalonb, R. Matalonb, L. Elsasa. aThe Dr. John T. McDonald Foundation Center for Medical Genetics, Leonard Miller School of Medicine, University of Miami, USA; bDepartment of Pediatrics/Cytogenetics, University of Texas Medical Branch, Children‘s Hospital, Galveston, TX, USA. Objective: In the USA, many centers are investigating the response to BH4 supplementation in patients with PKU. However, the eﬀects of BH4 supplementation on changes in blood phenylalanine and tyrosine require knowledge of the patient’s phenylalanine and tyrosine intake. Methods: Four patients, all female, age range 10–16 years, who had previously shown a 30% decrease in blood phenylalanine levels after a 24 h 10 mg/kg BH4 challenge were enrolled and received 10 mg/kg/day BH4 for one month. Weekly phenylalanine and tyrosine were measured in blood on ﬁlter paper and phenylalanine/tyrosine ratios were calculated. Two day diet records were submitted with each weekly blood sample. These were analyzed using nutrition analysis software (Nutritionist Pro). Measurements taken before BH4 (baseline) and after 4 weeks of BH4 supplementation were statistically analyzed using paired Student t test on Stata Version 7 statistical software, with a p value = 0.05 considered signiﬁcant. The results are reported as means ± SD. After one month of BH4 supplementation, phenylalanine levels decreased and tyrosine levels increased, neither statistically signiﬁcant. The phenylalanine/tyrosine ratio deceased by 40% which was statistically signiﬁcant. This was despite no statistically signiﬁcant change in phenylalanine or tyrosine intake or the ratio of phenylalanine to tyrosine intake.
Protein and energy intake were not statistically diﬀerent before and during BH4 supplementation. Conclusion: In BH4 responsive PKU patients dietary intake of phenylalanine and tyrosine do not change in a statistically signiﬁcantly manner over a one month period; there is a signiﬁcant decrease in their phenylalanine/tyrosine ratio that is a result of BH4 supplementation. Results Variables (n=4)
Baseline measurements Means ± SD
One month BH4 p value supplementation Means ± SD
Phenylalanine (blood) lmol/l Tyrosine(blood) lmol/l Phenylalanine/tyrosine ratio Phenylalanine dietary intake mg/kg/d Tyrosine dietary intake mg/kg/d Phenylalanine/tyrosine ratio Dietary intake
543.5 ± 54.4 27 ± 0.7 20 ± 1.8 10.8 ± 1.5
443 ± 29.8 41.5 ± 6.5 11.9 ± 0.65 8.3 ± 1.8
0.31 0.12 0.02 0.34
132.8 ± 24.6
126.4 ± 17.4
0.089 ± 0.016
0.066 ± 0.011
12. Development of a high-throughput assay for the identiﬁcation of small molecule inhibitors of human galactokinase. K.J. Wierenga, K. Lai. Dr. John T Macdonald Foundation Center for Medical Genetics, University of Miami, Miami, FL, USA. Introduction: Classic galactosemia (MIM 230400) is caused by deﬁciency of galactose-1-phosphate uridylyltransferase (GALT; EC 18.104.22.168), resulting in the unique accumulation of galactose-1-phosphate (gal-1-p), which induces endoplasmatic reticulum (ER) stress, and results in cell death. A diet free of galactose does not prevent long-term sequelae as gal1-p continues to accumulate due to endogenous galactose production. Galactokinase deﬁciency (MIM 230200) on the other hand is a relatively benign condition, with cataracts as the main complication; which can be managed with galactose restriction. We hypothesized that an inhibitory molecule of galactokinase (GALK, EC 22.214.171.124) activity would reduce conversion of endogenously produced galactose to gal-1-p, hence reducing ER stress. The following studies provide the methodology for large scale screening for inhibitors of GALK. Materials/methods: Human galactokinase was puriﬁed using Nickel aﬃnity chromatography on a lysate from E. coli strain BL21 (DE3) (Novagen) over-expressing the human GALK gene (cDNA clone obtained from I.M.A.G.E. consortium, ID: 3501788). We used PlateMate Plus High Throughput 384-Channel Automated Pipetting System (Matrix Technologies Corporation) and EnVision Multilabel Plate Reader (Perkin-Elmer) to miniaturize the GALK assay: galactose + ATP ! gal-1-p + ADP. The ATP not consumed during the reaction was measured using Kinase-Glo Luminescent Kinase Assay (Promega): ATP + luciferin ! luminescence. Z¢-factor was used to assess the suitability for high-throughput screening (HTS) of kinase inhibitors. Inhibition of GALK was tested using the ATP-analog adenosine 5¢-O-(3thio)triphosphate (ATPcS). Results: The optimized assay contained 5 ng GALK, 5 mM MgCl2, 60 mM NaCl, 20 mM Hepes, 0.3 mM galactose, 500 mM DTT, 0.5% DMSO, 0.01% BSA, and 5 lM ATP. Assay volume per well was 30 lL prior to adding Kinase-Glo. Z0 -factor was 0.90, illustrative of a robust assay. There was a 125-fold diﬀerence in luminescence between this assay, and a similar assay without GALK. An assay with added ATPcS revealed increasing inhibition of GALK activity with increasing concentration of ATPcS, illustrative of the ability of the assay to detect the presence of an inhibitory molecule. Conclusions: We established a robotic-friendly assay for HTS of inhibitors of GALK activity. We are now screening a library of 50,000 compounds to identify inhibitory molecules of GALK activity and will be able to deﬁne these inhibitors from these in-vitro studies, as well as study selected inhibitors in cellular models and determine whether they can prevent gal-1-p accumulation and the resulting ER stress reaction ex-vivo, in cells from galactosemic patients.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
Poster list 1 2 3 4 5
SIMD SIMD David R. Adams Georgianne Arnold Mai Baker
6 7 8 9 10 11 12 13
Bruce Barshop James Bartley Nenad Blau Yotam Blech-Hermoni Olaf Bodamer Nicola Brunetti-Pierri Kazuki Okajima Bruce H. Cohen
14 15 16 17
Veronica Cornejo Gerald F. Cox Kristina Cusmano-Ozog Ralph J DeBerardinis
18 David Dimmock 19 Katrina M. Dipple 20 Esperanza E. Font-Montgomery 21 Scott Freeto 22 P. Galvin-Parton 23 Jennifer Goldstein 24 Brett Graham 25 Andrea Gropman 26 Andrea Gropman 27 Andrea Gropman 28 Randall A. Heidenreich
29 Patrice Held 30 Lindsey Herrel 31 32 33 34 35
Sander Houten Kathleen Hruska Marjan Huizing Michael Kayser Katherine H. Kim
36 Dwight Koeberl 37 Brendan Lanpher 38 Changhong Li, 39 Uta Lichter-Konecki 40 Uta Lichter-Konecki 41 Nicola Longo 42 Deborah Marsden 43 Marsden, Deborah 44 Martin, Madelena
SIMD business SIMD business Long term follow-up of survivors of ‘‘metabolic stroke’’ associated with methylmalonic aciduria. Toxic intravenous arginine overdose in a girl with symptomatic OTC. Mutation analysis on conﬁrmed cases of 2-methylbutyryl Co-A dehydrogenase (SBCAD) deﬁciency in Hmong infants identiﬁed by newborn screening using tandem mass spectrometry. Metabolomic study of disorders of propionate metabolism. Enhanced clinic management system using a sharepoint website. Assessment of tetrahydrobiopterin (BH4)-responsiveness in phenylketonuria. Localization of glucocerebrosidase and alpha-synuclein in hippocmpal neurons from a gba null mouse. Newborn screening for lysosomal storage diseases—A reality? Clinical and molecular spectrum of alpers syndrome patients with POLG1 mutations. Four families with pyruvate dehydrogenase deﬁciency due to E1-beta (PDHB) mutations. Polarographic and enzymatic defect in mitochondrial complex III caused by BCS1L mutations in a girl with clinical features of both Bjørnstad syndrome and GRACILE syndrome. Result of follow up in 125 phenylketonuric children in Chile. A dose optimization study of Aldurazyme (laronidase) in patients with mucopolysaccharidosis I (MPS I). Early identiﬁcation and aggressive treatment of cobalamin C disease. Proﬁling metabolic activity in glioblastoma cells: Eﬀorts to integrate signal transduction and intermediary metabolism in a model of cell proliferation. The clinical features and molecular genetics of deoxyguanosine kinase deﬁciency. Glycerol kinase overexpression perturbs pathways of glucose catabolism: implications for understanding complexity in inborn errors of metabolism. Autosomal Dominant Polycystic Kidney Disease (ADPKD) Mimicking Autosomal Recessive Polycystic Kidney Disease (ARPKD) with Congenital Hepatic Fibrosis (CHF) and Portal Hypertension (PH). Chromatographic resolution and tandem MS measurement of the leucine isomers associated with the monitoring of MSUD patients. The work-up of persistent hyperinsulinemic hypoglycemia in a newborn infant—interesting genetic implications. Dried blood spot assay for Pompe disease: Diagnostic experience of the Duke Biochemical Genetics Laboratory. Genetic screen for suppressors of VDAC mutant phenotypes in drosophila: A model for mitochondrial dysfunction and disease. Neuroimaging ﬁndings post renal transplant in an adult with cobalamin-responsive methylmalonic academia. Preliminary experience with Functional MRI (fMRI) detects altered neural networks subserving executive function and attention in subjects with partial ornithine transcarbamylase deﬁciency (OTC). Preliminary experience with 1H Magnetic resonance spectroscopy at 3T detects altered brain metabolism in subjects with partial ornithine transcarbamylase deﬁciency (OTC). Niemann-Pick type C disease, Alzheimer’s disease, apolipoprotein E, and amyloid precusor protein: oes an alteration in the cholesterol-enriched microdomain lipid environment result in formation of neuroﬁbrillary tangles? Hermansky Pudlak proteins interact within biogenesis of lysosome-related organelle complex-2. Identiﬁcation of novel mutations in the medium chain acyl-CoA dehydrogenase gene in a heterogenous population. Gluconeogenesis in fatty acid oxidation-deﬁcient rat hepatoma cells and mouse primary hepatocytes. Analysis of conserved regulatory elements in the glucocerebrosidase gene locus. Allele-speciﬁc silencing of the dominant disorder sialuria by small interfering RNA. Can a common SNP in the organic anion transporter MRP4/ABCC4 inﬂuence homogentisic acid secretion. Management of diﬃcult infusion related reactions in a young patient with mucopolysaccharidosis type VI on Naglazyme therapy. Highly eﬃcacious gene therapy in glycogen storage disease type Ia (GSD-Ia) with a double-stranded AAV vector. Plasma branched-chain amino acid concentrations are decreased by sodium phenylbutyrate with no change in their appearance rate or protein turnover as measured by stable isotope tracers. Evidence of dysregulated insulin secretion in mice with global knockout of short-chain 3-hydroxy acyl-CoA dehydrogenas. A new prospective multicenter study of treatment and Outcome in Urea Cycle Disorders (UCDs). Treating a patient with severe early-onset, non-Dysmorphic Carnitine Palmitoyltransferase II (CPTII) deﬁciency. Glycosylation aﬀects membrane maturation of the OCTN2 carnitine transporter. Physician reported outcomes of enzyme replacement therapy in older, severely aﬀected patients with Pompe disease. Response to treatment with myozyme in juvenile patients with Pompe disease. Domino liver transplant in patient with intermediate maple syrup urine disease.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 45 Paul Minkler 46 Hiroki Morizono 47 48 49 50 51
Ljubica Caldovic Sumit Parikh Marzia Pasquali Dinesh Rakheja William J. Rhead
52 53 54 55 56 57 58
William J. Rhead Gunter Scharer Raphael Schiﬀmann Peter W. Stacpoole Pim Suwannarat Lawrence Sweetman Daniel Urban
59 Hilary Vallance 60 Sandy van Calcar 61 Johan Van Hove 62 Nithiwat Vatanavicharn 63 R.J.A. Wanders
64 65 66 67
Christopher A. Wassif Hans R. Waterham Tim Wood Qing Zhang
Quantitative method for the determination of carnitine and acylcarnitines in biological matrices by high performance liquid chromatography/mass spectrometry. Characterization of mutations in human N-acetylglutamate synthase using bioinformatic and crystallographic approaches. Role of arginine and Protein–Protein Interactions in Regulation of the urea cycle. Silver-Russell syndrome, UPD 7 and mitochondrial dysfunction. Analysis and separation of plasma glutarylcarnitine by UPLC-MS/MS. Sterol precursors accumulate in detergent-resistant membranes in SLOS and CDPX2 patients. Worldwide experience in newborn screening for Medium-Chain Acyl-CoA Dehydrogenase Deﬁciency (MCAD). Cardiomyopathy as the presenting feature in a 15-year-old boy with propionic academia. GA-I and the expanded newborn screening program. Cellular and tissue localization of globotriaosylceramide in Fabry disease. Pyruvate dehydrogenase complex deﬁciency due to abnormal stability of the E1aˆ subunit. Genetic mutation proﬁle of isovaleric acidemia patients in Thailand. Second tier diagnosis SCAD vs IBCD, IVA vs 2MBCD. The identiﬁcation and characterization of glucocerebrosidase activators and inhibitors as potential therapeutic agents for Gaucher disease. Retrospective genotyping of newborn screening cards for the P479L Carnitine Palmitoyltransferase (CPT1) variant: Correlation with acylcarnitine proﬁles and estimation of incidence in British Columbia. Acceptable low-phenylalanine foods and beverages can be made with glycomacropeptide from cheese whey for individuals with PKU. Finding twinkle in the eyes of a 71-year-old lady. Outcomes and complications of CPT1A deﬁciency observed during the long-term follow up of 4 cases. Enzymatic analysis of MCAD, VLCAD, and glutaryl-CoA dehydrogenase in lymphocytes with implication for neonatal screening. Enzymatic analysis of MCAD, VLCAD, and glutaryl-CoA dehydrogenase in lymphocytes with implication for neonatal screening. HEM Dysplasia and Ichthyosis are laminopathies rather than inborn errors of cholesterol synthesis. A lethal autosomal dominant defect of mitochondrial and peroxisomal ﬁssion. Creatine transporter deﬁciency: Repeat urine testing and false positives. Hepatic mtDNA depletion syndrome caused by novel mutations in MPV17 gene encoding a mitochondrial inner membrane protein.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
3. Long term follow-up of survivors of ‘‘metabolic stroke’’ associated with methylmalonic aciduria. D.R. Adamsa, J.L. Sloana, A.L. Gropmanc, E.H. Bakerb, C.P. Vendittia. aNHGRI, National Institutes of Health, Bethesda, MD, USA; bClinical Center, National Institutes of Health, Bethesda, MD, USA; cDepartment of Neurology, Children’s National Medical Center, Washington DC, USA. Objective: The natural history of the ‘‘metabolic strokes’’ associated with methylmalonic aciduria has been described in children but less so in surviving adults. We used neurologic examination, CNS imaging and magnetic resonance spectroscopy to study a group of seven adult survivors of metabolic stroke associated with methylmalonic aciduria. Methods: Seven patients aged 19–33 years were admitted for inpatient evaluation. CNS imaging and spectroscopy were performed using a 3 Telsa magnet to maximize spectroscopic sensitivity and resolve j-couples resonances. Data for each participant was evaluated by a group of specialists with expertise including imaging, neurology and biochemical genetics. Results: Five out of seven patients had initial strokes that could be identiﬁed as a discrete historical event. Among those patients, the median time from stroke to NIH admission was 18 years. The remaining two patients had one or more metabolic decompensations (including coma) followed by later MRI evidence that a stroke was likely to have occurred. Our patient group demonstrated heterogenous clinical and imaging ﬁndings. Both pyramidal and extrapyramidal manifestations were observed clinically, with poor apparent correlation between neurological signs and MRI changes. Brain imaging results included basal ganglia abnormalities, and unanticipated examples of leukodystrophy, leukoencephalopathy and possible Wallerian degeneration involving corticospinal tracts. The residual stroke-associated lesions were variable in size, and asymmetrical in 4/7 patients. MR spectroscopy demonstrated metabolite concentrations consistent with abnormalities in gray and white matter areas. Conclusions: ‘‘Metabolic stroke’’ associated with methylmalonic aciduria has a variety of possible long-term outcomes. In addition to the well-described cystic encephalomalacia seen in the basal ganglia, methionine-synthase independent white matter metabolism may also be perturbed and chronic degeneration seems likely. The poor correlation of both pyramidal and extrapyramidal neurologic ﬁndings with the structural changes seen on MRI suggests that the sequellae of MMAassociated ‘‘metabolic strokes’’ are complex. Spectroscopic studies using labeled precursors and neuroactive markers in aﬀected patients and animal models will be needed for a more complete understanding of the neurological manifestations observed in the patients as will diﬀusion tensor imaging to evaluate white matter microstructural changes that are not appreciated on routine anatomic imaging.
4. Toxic intravenous arginine overdose in a girl with symptomatic OTC. G.L. Arnold. University of Rochester School of Medicine and Dentistry, Rochester, NY, USA. Objective: Describe the ﬁndings associated with an accidental toxic overdose of intravenous arginine. Case report: An 11 month old girl was diagnosed with OTC after an episode of hyperammonemia associated with an intercurrent illness. She had several subsequent additional episodes of hyperammonemia, often requiring treatment with intravenous arginine and sodium phenylacetate/sodium benzoate; hyperammonemic episodes were typically rather quickly responsive to treatment but commonly associated with modestly elevated transaminases (up to 500–2000 U/L). At age 3 she was seen at a regional hospital for hyperammonemia and treated with intravenous glucose and arginine before and during transport. However unlike prior events in which ammonia and mental status improved rapidly during this treatment, on arrival to the tertiary medical center this time she had an ammonia of 351 lmol/L, chloride of 121 lmol/ L, bicarbonate of 19, BUN of 23 mg/dl, ALT of 4900 U/L, and worsening
mental status and neurological exam. This picture prompted a prompted a careful review of transfer records, where an accidental IV arginine overdose of 30 cc/kg of 10% arginine hydrochloride over 2 h was discovered The arginine was initiated in the referring hospital and completed during the transport. Plasma arginine measured approximately 4 h after the arginine infusion was completed was 283 lmol/L with an accompanying ammonia of 408 lmol/L. Over the next several hours the patient began to show rapid improvement in mental status and neurologic examination; ammonia after the next 4 h (8 h after infusion) was 164 and arginine was 99, and at 4 h after that (12 h after infusion) ammonia was 49 with arginine of 61. The patient tolerated the episode without evidence of sequelae. However her hyperammonemia remained brittle over the next year and she underwent orthotopic liver transplant with good outcome. In this case the source of the error was a miscommunication between nursing and pharmacy—the pharmacy sent up the entire 300 cc bottle of arginine HCl intending that only 20 cc be administered, with the remainder available to begin maintenance dosing during transport. However, the nurse believed the bottle contained the desired volume of drug diluted with 300 cc of saline and administered the entire 300 cc as a 2 h loading dose. Discussion: An overdose of 30 cc/kg of 10% arginine caused worsening hyperammonemia accompanied by hyperchloremia and mild acidosis. The excess arginine was metabolized within eight hours. Although this event was short lived and without permanent sequelae in this female OTC patient, such an overdose might have more severe consequences in a patient with less native urea cycle enzyme activity.
5. Mutation analysis on conﬁrmed cases of 2-methylbutyryl Co-A dehydrogenase (SBCAD) deﬁciency in Hmong infants identiﬁed by newborn screening using tandem mass spectrometry. M.W. Bakerc,d, S.C. Van Calcarb,c, T. Litsheimd, G. Hoﬀmand, J. Vockleyf, W.J. Rheade, J.A. Wolﬀ b,c, M.S. Durkina. aDepartment of Population Health Sciences, University of Wisconsin, Madison, Wisconsin, USA; bDepartment of Pediatrics and Medical Genetics, University of Wisconsin, Madison, Wisconsin, USA; cWaisman Center, University of Wisconsin, Madison, Wisconsin, USA; dWisconsin State Laboratory of Hygiene, University of Wisconsin, Madison, Wisconsin, USA; eDepartments of Pediatrics and Pathology, Medical College of Wisconsin, Milwaukee, Wisconsin, USA; fDepartment of Pediatrics, University of Pittsburgh School of Medicine, Children’s Hospital of Pittsburgh, Pittsburgh, Pennsylvania, USA. SBCAD deﬁciency is a disorder of l-isoleucine metabolism recently found in high frequency in the Hmong . A common mutation at 1165 A > G in ACADSB gene has been identiﬁed in this ethnic group. This study reports on 16 additional cases found to be homozygous for this mutation. Method: Genomic DNA was extracted from a 1/8’’ dry blood spot, and underwent PCR reaction to generate the 260 bp fragments ﬂanking ACADSB 1165 A > G site. The PCR products were then incubated with restriction enzyme BtsCI at 50 C for 2 h. The wild type fragments were cut into two fragments of 201 and 59 bp. The ACADSB 1165 A > G mutation abolishes the BtsCI recognition site and the PCR products remained 260 bp. Analysis was completed on ﬁlter paper spots from 16 Hmong and 2 non-Hmong infants with biochemically conﬁrmed SCBADD. Ten controls were randomly selected from newborn screening cards of infants of known Hmong descent but not identiﬁed with this disorder. Results: All 16 SBCADD cases were homozygous for the ACADSB 1165 A > G mutation. Controls were either wild type (9 cases) or heterozygote (1 case) for this mutation. Analysis from conﬁrmed SBCADD cases in 2 non-Hmong infants were wild type for this mutation. Conclusion: In 16 Hmong infants identiﬁed by MS/MS with SBCADD, all were homozygote for 1165 A > G of ACADSB gene. It is likely that the gene ACADSB position 1165 is an exonic splicing enhancer, and the mutation at this position causes the splicing error in the pre-mRNA processing. This identical mutation was previously identiﬁed in 3 infants of Hmong descent. These results suggest this is a common mutation in this ethnic group. Further study is needed to identify the clinical signiﬁcance of this ﬁnding.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 6. Metabolomic study of disorders of propionate metabolism. William R. Wikoﬀa, Jon A. Gangoitib, Gary Siuzdaka, Bruce A. Barshopb. a Department of Molecular Biology and The Center for Mass Spectrometry, The Scripps Research Institute, USA; bDivision of Genetics, Biochemical Genetics Laboratory, Department of Pediatrics, UCSD School of Medicine, La Jolla, CA, USA. A global mass spectrometry-based approach to metabolomics was used to characterize plasma samples from patients with methyl-malonic acidemia (MMA) and propionic acidemia (PA). The screening platform was designed to be comprehensive, using a novel nonlinear data alignment process and online database to identify features which vary signiﬁcantly between disease and normals. The study included samples normal adults (n = 3) with and without carnitine supplementation, from normal children without (n = 12) and with (n = 3) carnitine, and children with MMA (n = 15) and PA (n = 9). Methanolic plasma extracts were injected onto a reverse phase capillary HPLC interfaced to an electrospray time-of-ﬂight mass spectrometer, and data collected from m/z 75 to 1000. The program XCMS (C.A. Smith et al., Anal. Chem. 78:779–87, 2006) was used to integrate chromatographic peaks, assign the peaks into groups, and use the grouped data for a non-linear correction in the time domain. Compounds with signiﬁcant diﬀerences were selected auto-matically in an untargeted manner, without prior consideration of identity, but a posteriori identiﬁcation of a number was possible. Among compounds diﬀering between patient (MMA and PA) samples and controls, the most signiﬁcant was identiﬁed as propionyl carnitine (t-test value, t = 1.3 · 10)18), a well-known marker for the disorders. Other acylcarnitine metabolites also showed signiﬁcant diﬀerentiation, including C14 (t = 6.0 · 10)8), C6:1 (or methyl-C5:1) (t = 6.4 · 10)7), C6- (t = 9.1 · 10)6), and C5:1 (t = 1.4 · 10)3). However, despite eﬀorts for comprehensiveness, C4DC was notably not detected (although readily measured in conventional acylcarnitine analysis of the samples, with average 0.56 lM for MMA (and t = 2.4 · 10-9 compared to control). c-Butyrobetaine was in creased (13.3-fold, t = 3.3 · 10-3 for MMA + PA overall), but in control range for some and highly increased in a subset. All patients were taking carnitine, and c-butyrobetaine might arise from enteric bacterial metabolism rather than endogenous carnitine synthesis. There were also signiﬁcant diﬀerences between MMA and PA patients; at p = 0.005, there were 154, and using p = 0.001, there were 76 compounds (2.2% of observed peaks) signiﬁcantly diﬀerent. Those features included isovalerylcarnitine (increased in PA relative to MMA with a t-test value of 9.7 · 10)8), and unidentiﬁed ions of mass 177.10 (increased in MMA) and 386.33 (increased in PA) with t-test values between 1.5 and 2.8 · 10-5. A wide array of metabolites are aﬀected in organic acidemias and a complex cascade of metabolic eﬀects may result from the knockout of a single enzyme. Metabolomics may expand the range of perturbed metabolites associated with human disease, and has the potential to increase insight into the ramiﬁcations of metabolic disease. 7. Enhanced clinic management system using a sharepoint website. D.G. Hook, J.A. Bartley. UC Irvine Medical Center, Department of Pediatrics, Division of Genetics and Metabolism, Orange, CA 92868, USA. Objective: Improve patient care and health outcomes through better clinic management of time, personnel, and resources. Methods: An electronic clinic workspace was developed using Microsoft Oﬃce Sharepoint 2003 software in the University of California Irvine (UCI) Metabolic Specialty Care Center. Sharepoint was developed to provide industry with an electronic platform to connect people and projects. The application integrates programs and processes, allows collaboration, and the ability to work oﬀsite. The clinic’s webpage is located on a server behind the UCI’s ﬁrewall. Only invited members may access the site and activity may be monitored. Using Infopath, another Microsoft program, electronic patient care documentation and forms were developed and deployed. All patient documents are centrally stored, managed, and accessed. Using Sharepoint increased overall quality of patient care, improved consistency of patient care, and enhanced ease of access to patients’ documents. Redundant
entry of patient data is reduced by the population of varied forms through single entry of speciﬁc data. Clinic work is coordinated with shared calendars, task lists, alerts, and notiﬁcations. The electronic workspace allows clinic members to provide patient care while working in satellite clinics. Members may fax prescriptions, access patient documentation and information, while continuing to provide direct patient care in oﬀsite clinics. Results: The documentation process was streamlined through the Sharepoint website which reduced work eﬀort by as much as 80%. This has lead to a greater amount of time spent on direct patient care, an increase in patient services such as the authorization of medical foods, consistent work-product among clinic members, and reduction in training time of new members. Conclusions: The UC Irvine Metabolic Specialty Care Center Sharepoint website connects clinic members, patient care work processes, and information. It greatly enhances patient care through greater eﬃciency, increased quality of documentation, and the ability to work oﬀsite. 8. Assessment of tetrahydrobiopterin (BH4)-responsiveness in phenylketonuria. Betina Fiege, Nenad Blau. Division of Metabolism and Molecular Pediatrics and Division of Clinical Chemistry and Biochemistry, University Children’s Hospital, Zurich, Switzerland. Aim of the study was to determine the prevalence and identify subjects with phenylketonuria (PKU) responsive to 6R-tetrahydrobiopterin (BH4) and to establish selection criteria for potential treatment with BH4. Blood phenylalanine levels from 557 newborns and infants with various degrees of PKU (blood phenylalanine 301–4743 mmol/L) challenged with BH4 (20 mg/kg bw) were analyzed at 8 and 24 h after BH4 administration. The two modalities were compared for phenylalanine reduction. The overall prevalence of BH4-responsiveness within patients with PKU for the blood phenylalanine reduction of 20, 30, 40, and 50% was 48, 38, 31, and 24%, respectively, using the 8 h modus, and 55, 46, 41, and 33%, respectively, using the 24 h modus. Using the 30% cut-oﬀ, BH4-responsiveness was similar regardless of the two modalities in patients with mild hyperphenylalaninemia (79–83% responders), mild PKU (49–60% responders), and classical PKU (7–10% responders). In summary, BH4-responsiveness is more prevalent than initially assumed, particularly in patients with mild hyperphenylalaninemia and mild PKU. Depending on the severity of hyperphenylalaninemia, selection criteria for the potential treatment with BH4 may range between 20 and 40% of blood phenylalanine reduction after 24 h. 9. Localization of glucocerebrosidase and a-synuclein in hippocmpal neurons from a gba null mouse. Y. Blech-Hermoni, O. Goker-Alpan, E. Goldin, M.E. LaMarca, E. Sidransky. Medical Genetics Branch, NHGRI, NIH, Bethesda, MD 20814, USA. Objective: Gaucher disease (GD) is the most common lysosomal storage disease. It is an autosomal recessive disorder characterized by the accumulation of glucocerebroside (GC), due to mutations in the gene (Gba) encoding the lysosomal hydrolase glucocerebrosidase (GCase). A growing number of reports suggest an association between GD and parkinsonism. In particularly, a disproportionate number of PD patients have been found to be carriers of GD mutations, leading to the hypothesis that a mechanistic relationship between misfolded GCase and mutant (A53T) a-synuclein, previously described in PD, results in the pathological aggregation of a -synuclein. Although there is no common phenotype or genotype characterizing the human cases, we set out to observe the eﬀects of co-expression of mutant (L444P and N370S) GCase and mutant (A53T) a-synuclein. Method: A mouse model exists in which gba has been knocked out. Although homozygous knockout mice express no residual enzyme activity, they also die perinatally. We therefore developed a cellular model of hippocampal neurons from homozygous null embryos. In our model, primary neuronal cultures were established from gba)/) mouse embryonic hippocampal neurons. These neurons were co-transfected with A53T a-synuclein (Scna) and wild-type/L444P/N370S human Gba. Forty-eight hours post-transfection, the neurons were ﬁxed and immuno-stained for GCase and a-synuclein. Direction: We hope to be able
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
to more closely recapitulate the human genotype by expressing Gba on a null background. Furthermore, we intend to investigate the expression of A53T a-synuclein in hippocampal neurons of mouse embryos homozygous for the L444P or N370S Gba and, conversely, the expression of mutant Gba in hippocampal neurons from mice homozygous for A53T Scna. 10. Newborn screening for lysosomal storage diseases—A reality? O.A. Bodamer, A. Mu¨hl. Division of Biochemical Genetics, University Children’s Hospital Vienna, Austria. Neonatal screening programmes for inborn errors of metabolism are implemented throughout the world. Disorders include defects of fatty acid oxidation, defects of protein metabolism, galactosemia, hypothyroidism and others. Ideally, the natural history of such disorders is well understood while early diagnosis and treatment results in signiﬁcant reduction of otherwise high morbidity and mortality. With the advent of novel treatment modalities in lysosomal storage diseases (LSD) such as bone marrow transplantation and/or enzyme replacement therapies, newborn screening for LSD has become a focus point. From a technological perspective high-throughput newborn screening for LSD may be feasible using diﬀerent analytical approaches. Among these, screening by tandem-mass spectrometry using unique, speciﬁc substrates and internal standards seems to be the most promising method as enzyme activities can be readily measured in dry blood spots from neonatal ﬁlter cards. This technique may be incorporated into existing neonatal screening programmes using tandem mass spectrometry. Prior to implementation of neonatal screening programmes for LSD, pilot studies have to demonstrate its technical feasibility, sensitivity and speciﬁcity. In addition, strategies for conﬁrmatory testing, treatment, follow-up care and scientiﬁc evaluation have to be deﬁned and agreed upon at an international level. 11. Clinical and molecular spectrum of Alpers syndrome patients with POLG1 mutations. N. Brunetti-Pierri, Q. Zhang, P.C. Chou, C.K. Truong, J. Wang, E.S. Schmitt, W.J. Craigen, L.-J. Wong. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. Objective: We studied at the clinical, biochemical and molecular level a large cohort of patients aﬀected with Alpers syndrome, an autosomal recessive, early-onset fatal disease characterized by intractable seizures, global neurological deterioration, and hepatic failure. Alpers syndrome is due to mutations in the POLG1 gene encoding for DNA polymerase gamma required for mitochondrial DNA biosynthesis. So far, about 30 mutations have been associated with Alpers syndrome (http:// dir-apps.niehs.nih.gov/polg). POLG1 mutations are responsible for a variety of mitochondrial diseases, including also dominant and recessive forms of progressive external ophthalmoplegia (PEO), Parkinsonism, juvenile spinocerebellar ataxia-epilepsy syndrome, sensory ataxia with neuropathy, dysarthria and ophthalmoparesis (SANDO). Methods: Clinical, biochemical and molecular data from the 19 patients with Alpers syndrome were collected. Results: The age of disease onset in our cohort ranged from 2 months to 22 years. Almost all patients presented with intractable seizures and liver problems became often evident only later. Based on the initial presentation including an intense seizure activity, several patients were thought to be aﬀected with either Angelman or Rett syndrome. 6/19 patients died before 2 years of age with liver failure. Mitochondrial respiratory chain enzyme analysis on liver and muscle, available in a subgroup of patients, revealed reduced activities in the RC complexes containing mitochondrial encoded protein subunits. Real time quantitative PCR analysis demonstrated mtDNA depletion. The molecular analysis of POLG1 gene revealed, as previously reported, that the A467T is the most common mutations being present in 10 out of the 19 patients (53%). We identiﬁed 10 novel mutations, 8 missense mutations (G11D, L83P, H110Y, S305R, R853Q, G888S, R1138C, K1191R), one deletion (c.1270 del CT) and one insertion (c.2544-2545 ins GC). The mutation K1191R appeared to be de novo. Interestingly, in 3 patients
POLG1 mutations were found only on one allele. While heterozygous mutations in POLG1 have been previously reported in patients with PEO, they have not been previously reported with Alpers syndrome. Mutations in a diﬀerent gene giving Alpers-like syndrome may be considered in these cases. Alternatively, synergistic heterozygosity involving heterozygous mutation in another gene functioning in the same pathway may be responsible for the disease. Conclusion: The identiﬁcation of novel mutations and the ﬁnding of a de novo mutation further support the hypothesis that POLG1 is particularly prone to mutations. In addition, our data indicate that patients carrying POLG1 mutations may not express at presentation the full spectrum of Alpers phenotype. Given the clinical heterogeneity of patients with Alpers syndrome, POLG1 molecular analysis is warranted in young patients presenting with intractable seizures and dysfunction in energy metabolism. 12. Four families with pyruvate dehydrogenase deﬁciency due to E1-b (PDHB) mutations. K. Okajimaa, L.G. Korotchkinab, D.S. Kerra. a Center for Inherited Disorders of Energy Metabolism (CIDEM), Department of Pediatrics, Case Western Reserve University, Cleveland, OH, USA; bDepartment of Biochemistry, School of Medicine and Biomedical Sciences, State University of New York at Buﬀalo, Buﬀalo, NY, USA. Pyruvate dehydrogenase complex (PDC) deﬁciencies are a major cause of primary lactic acidosis. About 60% of cases result from mutations of the gene for the E1-a subunit (PDHA1), with fewer cases resulting from mutations in genes for E3, E3-binding protein, E2, and the E1-b subunit (PDHB). We have found 4 cases of PDHB mutations among 69 analyzed cases of PDC deﬁciency, including a 5 year old male (consanguineous, homozygous R36C); a neonatal female who died soon after birth, (compound heterozygous C306R/D319V), a 26 year old female. (heterozygous for I142M/W165S), and a 3 month old female (consanguineous, homozygous Y132S) who is a sibling of a previously published case (Brown et al., Hum. Genet 115 (2004) 123–27). No PDHA1 mutations were detected in these patients. Their ethnic background is diverse (Caucasian, Arab, and African American descent). All cases had lactic acidosis and developmental delay, 34 had agenesis of corpus callosum, seizures and hypotonia, and one died within the ﬁrst year of life. These clinical ﬁndings are similar to those of PDHA1 mutations, except consanguinity was found only in PDHB families. All cases were diagnosed by low PDC activity, with normal E2 and E3 activities. PDC activity in lymphocytes from 6 parents is normal, who all proved to be heterozygous carriers for the respective mutations. Two patients who have been on a ketogenic diet since diagnosis appear to have more favorable outcomes. Computer analysis predicts that: R36C aﬀects the interaction of several amino acids resulting in conformational change, I142M aﬀects stability of the beta chain, W165S aﬀects hydrophobic interaction between subunits changing conformation of the active TPP site, C306R aﬀects conformation around a K ion aﬀecting stability of beta subunit, D319 is in the vicinity of C306, and Y132C aﬀects interaction between the two beta subunits. These residues are conserved in PDHB across species; Y132 is conserved in other TPP enzymes. These observations support the conclusion that these are all pathogenic mutations. 13. Polarographic and enzymatic defect in mitochondrial complex III caused by BCS1L mutations in a girl with clinical features of both Bjørnstad syndrome and GRACILE syndrome. Bruce H. Cohena, Bruce A. Barshopb, J. Travis Hinsonc,d, Charles L. Hoppele, J.G. Seidmanc,d, Christine E. Seidmanc,d. a Department of Pediatrics, The Neuroscience Institute, The Cleveland Clinic Foundation, USA; bUniversity of California, San Diego, USA; cDepartment of Genetics Harvard Medical School, USA; dThe Howard Hughes Medical Institute, USA; eDivision of Clinical Pharmacology, Case Western Reserve University, USA. Introduction: BCS1L encodes for a 419 amino acid inner mitochondrial membrane chaperone protein presumed to facilitate insertion of Rieske Fe/S protein into complex III precursors. We describe the polarographic
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 and respiratory chain enzymatic features of a 4 year old girl with Bjørnstad syndrome (SNHL and pili torti) and several features of GRACILE syndrome (growth retardation, aminoaciduria, cholestasis, iron overload, lactic acidosis and early death), who was found to have mutations in the BCS1L gene and a defect in complex III of the electron transport chain (ETC). Methods: DNA was ampliﬁed and sequenced, and sequence variants were conﬁrmed by restriction-enzyme digestion and polymorphisms identiﬁed in NIH and Celera databases. Measurements of oxidative rates were measured under normal ADP (state 3) and ADPlimited (state 4), high-ADP concentrations as well as uncoupled conditions; performed on freshly isolated muscle mitochondria. ETC enzyme activity was measured in freshly isolated mitochondria and whole muscle homogenate. Results: State III oxidation rate of duroquinol (complex III substrate) with rotenone was 388 natoms oxygen/min/mg protein (control mean 588 ± 74, control range 433–766). The oxidation rate did not improve with the addition of high concentrations of ADP: 264 (control mean 564 ± 75, range 206–779). Enzymatic activity of complex III (decylubiquinol-cytochrome c reductase) was 671 nmol/min/ mg mitochondrial protein (control mean 4512 ± 1527, control range 1417–8498), and of complex I + III (rotenone-sensitive NADH-cytochrome c reductase) was 51 (mean 1377 ± 554, range 307–2658); signiﬁcantly reduced to 15 and 4% of control values. Two novel BCS1L mutations (G35R and R184C) were identiﬁed. Discussion/Conclusion: Mutations in the BCS1L gene may cause a wide spectrum of disease, which depends on the extent to which BCS1L mutations decrease respirasome electron transport activity and increased reactive oxygen species. This patient demonstrates novel mutations in this gene that result in the clinical features of Bjørnstad syndrome and GRACILE Syndrome. The predicted functional and enzymatic function of mitochondrial complex III activity was markedly reduced in this patient, demonstrating consistency in clinical presentation, genetic ﬁndings, protein function and enzyme deﬁciency.
14. Result of follow up in 125 phenylketonuric children in Chile. V. Cornejo, G. Castro, E. Ferna´ndez, J.F. Cabello, A. De la Parra, A. Valiente, M. Colombo, E. Raimann. INTA, Universidad de Chile, Chile. Introduction: Since 1992, Chile started a National Neonatal Screening Program for Phenylketonuria and Congenital Hypothyroidism in all the Public Health Maternities. The organization of this Program is based on a Committee constituted by the Ministry of Health, INTA, University of Chile and the Occidental Health Service. Methodology: The method used for the determination of phenylalanine is ﬂuorometric test and all positive results for PKU are sent to INTA, University of Chile where the diagnosis is conﬁrmed by tandem mass spectrometry. Results: We present 125 Classical PKU diagnosed in average at 18 ± 10.4 days of life, with plasma Phe levels of 20 ± 8 mg % and tyrosine levels 0.9 mg %. The incidence for classical PKU is 1:15.600 and 1:9.940 for Hyperphenylalaninemia (171 children). Sixty one children are male and 64 female. The age is less than 12 months in 8%, 24% is between 1 and 4 years old, 4% is between 4 and 10 years old and 28% is older than 10 years. The Phe intake tolerated in 55% is <20 mg/k/day and in 3% the Phe intake is over 50 mg/kg/day. 87% has a normal nutritional status and 14% is obese. The intellectual quotient is normal in 90% of PKU children. Conclusions: It is important to start neonatal screening, but the follow up program is the most important step for preventing mental retardation. 15. A dose optimization study of aldurazyme (laronidase) in patients with mucopolysaccharidosis I (MPS I). G.F. Coxa, R. Giuglianib, A.M. Martinsc, E.R. Valadaresd, J.T.R. Clarkee, J.E.C. Goesf, M.A. Wordena, M. Sidmana, E.D. Kakkisg. aGenzyme Corporation, Cambridge, MA, USA; bHospital de Clinical de Porto Alegre, Porto Alegre, Brazil; cUniversidade Federal de Sao Paulo, Sao Paulo, Brazil; d Universidade Federal de Minas Gerais, Belo Horizonte, Brazil; eThe Hospital for Sick Children, Toronto, CA; fHospital Infantil Joana de Gusmao, Florianopolis, Brazil; gBioMarin Pharmaceutical, Novato, CA, USA.
Objective: To evaluate the pharmacodynamics and safety of diﬀerent laronidase dose regimens. Methods: A 26-week, randomized, open-label, multicenter, multinational, study in 33 MPS I patients receiving 1 of 4 dose regimens of laronidase: 0.58 mg/kg (100 U/kg) IV qw (labeled dose); 1.2 mg/kg (200 U/kg) IV qw; 1.2 mg/kg (200 U/kg) IV q2w; and 1.8 mg/ kg (300 U/kg) IV q2w. Results: Patients were 53% female, 62% Caucasian, and 26% Hurler. Mean age was 8.7 yr (range 1.4–20.7 yr). The 4 treatment groups showed similar pharmacodynamic responses after 26 weeks of treatment with only small diﬀerences that tended to favor the higher doses over the labeled dose. Mean urinary GAG reduction was 58% for the labeled dose vs. 63–67% for the other doses. Mean liver volume reduction was 26% for the labeled dose vs. 31–32% for the other doses; however, this diﬀerence was not apparent when only patients with abnormal baseline liver volumes were considered. Mean change in 6MWT distance was +7 m for the labeled dose group vs. )12 ± 52 m for the other doses. Laronidase was well-tolerated and had an acceptable safety proﬁle in all dose groups. One 4-yr-old Hurler patient with acute bronchitis died of respiratory failure 18 h after receiving her ﬁrst 1.2 mg/kg dose of laronidase: her death was considered possibly (Sponsor) or remotely (Investigator) related to laronidase. Thirteen of 33 (39%) patients experienced a total of 75 infusion-associated reactions (IARs), the most common of which were pyrexia (21%), vomiting (15%), rash (15%), and urticaria (12%). Most IARs were mild, easily managed, and decreased in frequency over time. Patients who received greater amounts of laronidase per 2-week period (1.8 or 2.4 mg/kg) experienced more IARs than those who received the labeled dose equivalent (1.2 mg/kg), but the diﬀerence was attributable to a few patients. Anti-laronidase IgG antibodies were detected in 32 of 33 (97%) patients. Seroconversion occurred faster in the qw than the q2w regimens though peak titers were similar. No patient tested IgE-positive. Conclusions: The 0.58 mg/kg qw laronidase dose regimen provided near-maximal reductions in lysosomal storage (urinary GAG level and liver volume) and the best beneﬁt-to-risk ratio. The 1.2 mg/kg q2w regimen may provide an acceptable alternative for patients with diﬃculty receiving qw infusions, but the long-term eﬀects are unknown.
16. Early identiﬁcation and aggressive treatment of cobalamin C disease. K. Cusmano-Ozoga, M. Martinb, E. Nicholasb, S. Packmanb, D.S. Rosenblattc, T.M. Cowana,d, G.M. Ennsa..aDepartment of Pediatrics, Division of Medical Genetics, Stanford University, Stanford, CA, USA; bDepartment of Pediatrics, Division of Medical Genetics, University of California, San Francisco, CA. USA; d Department of Human Genetics and Division of Medical Genetics, Department of Medicine, McGill University, Montreal, Que., Canada; e Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA. Cobalamin C (cblC) disease, the most common inborn error of vitamin B12 metabolism, is characterized by elevated levels of methylmalonic acid (MMA) and homocysteine (Hcy). Typical ﬁndings in early onset disease include mental retardation, nystagmus, visual impairment and neurodegeneration despite treatment with parenteral B12 0.5–1 mg 3·/week or 0.5 mg daily. Since July 2005, we have identiﬁed six patients by expanded newborn screening with biochemical ﬁndings consistent with cblC. This was conﬁrmed by complementation studies in four patients, with conﬁrmatory studies ongoing in two. Targeted mutation analysis of the MMACHC gene revealed one patient to be homozygous for 482G > A (R161Q), one heterozygous for 271dupA (R91KfsX14), and a third heterozygous for 609G > A (W203X). Further DNA studies are ongoing. Four of the six patients were asymptomatic at presentation; one had mild hypotonia, which has since resolved. The ﬁnal one, for whom treatment was delayed until age 1 month, presented with moderate hypotonia and seizures, which have resolved. Following the initial screening result and conﬁrmatory biochemical studies, aggressive treatment was started with daily intramuscular injections of hydroxocobalamin 1 mg, and oral supplementation of folic acid 1 mg, l-carnitine 100 mg/kg/day, and betaine–HCl 300 mg/kg/day. One patient has also required methionine
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
supplementation. Propimex formula was started in four cases, but was later discontinued when growth and metabolic parameters were found to be stable on the above treatment. In all patients, serum MMA and Hcy dropped to normal or near-normal levels within three weeks of initiating therapy: MMA pretreatment 40–254 lM (mean 131.29 ± 83, controls <0.3) and post treatment 0.41–8.58 lM (mean 2.32 ± 3.16); Hcy pretreatment 58–250 lmol/L (mean 121.85 ± 99, controls <14) and post treatment 5.4–70.1 lmol/L (mean 27.06 ± 24). Five of the six patients are now less than 8 months and have normal development; two of these have had a normal ophthalmologic exam at 6 months. The patient in whom treatment was delayed was found to have nystagmus and decreased visual acuity at age 9 months, but essentially normal development at one year. Given the ranges of abnormal metabolites and clinical presentations, cblC disease appears to comprise a spectrum. Additional studies including genotype-phenotype correlation are needed. Long term follow up with longitudinal ophthalmologic and developmental evaluations is essential to determine if this aggressive treatment regimen started at an early age alters the natural history of this condition.
17. Proﬁling metabolic activity in glioblastoma cells: Eﬀorts to integrate signal transduction and intermediary metabolism in a model of cell proliferation. Ralph J. DeBerardinisa,b, Anthony Mancusoa, Suzanne Wehrlib, Craig B. Thompsona. aCancer Biology, University of Pennsylvania, USA; bChild Development, Rehabilitation Medicine and Metabolic Disease, The Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA. During tumorigenesis and other situations of cell proliferation, cells undergo a metabolic ’transformation’ characterized by high rates of glycolysis and macromolecular biosynthesis. This transformation is triggered by activation of signal transduction pathways, which reorchestrate metabolic ﬂuxes into a platform that supports cell growth. A major goal in cancer research is to better characterize the metabolic activities of proliferating cells and to integrate them fully with modern understanding of signal transduction. Here we studied signal transduction and metabolism in a human glioblastoma cell line, SF188. In these cells, serum stimulation of the phosphatidylinositol 3¢ kinase (PI3K)/Akt signaling pathway promoted glucose utilization, lipid synthesis and cell proliferation. We used a combination of techniques, including real-time metabolic analysis by 13C nuclear magnetic resonance spectroscopy, to further study the metabolism of abundant nutrients in these cells. The results showed that glioblastoma cells exhibit pronounced aerobic glycolysis (the ‘Warburg eﬀect’) during proliferation, with robust glucose consumption and synthesis of lactate. A fraction of pyruvate from glycolysis entered the tricarboxylic acid (TCA) cycle via pyruvate dehydrogenase. The cells did not completely oxidize this pyruvate, because isotopomer analysis of mitochondrial metabolites revealed a large eﬄux of intermediates from the TCA cycle. We determined that lipid synthesis accounted for part of this eﬄux, and that glucose contributed at least 60% of the carbon for de novo fatty acid synthesis, a required activity for tumor cell growth. Together, these data implied a non-glucose source of anaplerosis to support ongoing TCA function during growth. By perfusing cells with both 13C-labeled glucose and 13C-labeled glutamine, we determined that glutamine provided more than 80% of the anaplerotic ﬂux in glioblastoma cells. Therefore, growth of glioblastoma cells involves catabolism of both glucose and glutamine; glucose provides carbon for fatty acid synthesis while glutamine maintains TCA cycle activity. These studies are the foundation of a comprehensive proﬁling of intermediary metabolism during cell proliferation, and provide one explanation for the high rate of glucose and glutamine consumption long known to characterize tumor growth.
18. The clinical features and molecular genetics of deoxyguanosine kinase deﬁciency. D.P. Dimmocka, Q. Zhanga, J. Shiehb, P.-C. Choua, C. Truonga, E. Schmitta, M. Sifry-Platc, C.H. Ficicioglud, G.M. Ennse, E.M. Archf, N. Longog, M.H. Lipsonc, W.J. Craigena, L.-J. Wonga. a Molecular and Human Genetics, Baylor College of Medicine,
Houston, TX, USA; bMedical Genetics, J. David Gladstone Institute at UCSF, San Francisco, CA, USA; cDeptartment of Medical Genetics, Kaiser Permanente, Sacramento, CA, USA; dDepartment of Metabolism, Children’s Hospital Philadelphia, Philadelphia, PA, USA; eDivision of Medical Genetics, Stanford University School of Medicine, Stanford, CA, USA; fMassachusetts General Hospital, Boston, MA, USA; gDepartment of Peds, Div Med Genetics, University of Utah, Salt Lake City, UT, USA. Background: Deoxyguanosine kinase (DGK; MIM 601465) is a nuclear gene that along with thymidine kinase-2 (TK2; MIM 188250) salvages deoxyribonucleotides (dNTPs) for mtDNA synthesis. Deﬁciency of either of these genes causes a mitochondrial depletion syndrome. Results: We have identiﬁed 6 separate families with mutations in the DGK coding region. In all patients there is disturbance of hepatic function. This has typically presented with signiﬁcant elevations in ALT and AST. Patients have cholestasis with a normal gamma GT. Hypoglycemia is a signiﬁcant feature of this illness in many of the patients. Liver biopsy typically shows lipid accumulation, ﬁbrosis and may show increased or normal numbers of mitochondria on electron microscopy. In 4 of the 6 families the probands have also presented with signiﬁcant failure to thrive. Although hypotonia and nystagmus are common ﬁndings, neurological dysfunction was not seen in 2 siblings identiﬁed in our series. This is consistent with other published cases. A total of 11 mutations have been identiﬁed in 6 families. 10 of these 11 mutations are novel. Electron transport chain activities and mtDNA content are considerably reduced in both muscle and liver when compared with controls. Conclusions: Mitochondrial depletion caused by mutations in DGK should be considered in children with hepatic dysfunction or cholestasis even without neurological ﬁndings. Full gene sequencing is warranted if DGK mutations are suspected.
19. Glycerol kinase overexpression perturbs pathways of glucose catabolism: Implications for understanding complexity in inborn errors of metabolism. K.M. Dipplea,b,c,d, J.S. Hea, J.C. Liaod,e, G. Srirama,e. aDepartment of Human genetics, David Geﬀen School Medicine at UCLA, USA; bDepartment of Pediatrics, David Geﬀen School of Medicine at UCLA, USA; cMattel Children’s Hospital at UCLA, USA; dBiomedical Engineering Interdepartmental Program, Henry Samueli School of Engineering and Applied Science, UCLA, Los Angeles, CA, USA; e Department of Chemical and Biomolecular Engineering, Henry Samueli School of Engineering and Applied Science, UCLA, Los Angeles, CA, USA. Glycerol kinase (GK) has several diverse cellular functions in mammalian cells including phosporylation of glycerol. Glycerol kinase deﬁciency (GKD) is a complex, X-linked inborn error of metabolism (IEM), wherein no genotype-phenotype correlation has been observed. Metabolic ﬂux has been hypothesized to play a role in the complexity of GKD, therefore, we investigated compared the ﬂux analysis between wild type and two GKoverexpressing H4IIE rat hepatoma cell lines. We quantiﬁed ﬂuxes in pathways of glucose catabolism by using stable isotope labeling, isotopomer measurements and analysis, and mathematical metabolic network modeling. We mathematically designed a stable isotope carbon source mixture to precisely measure ﬂuxes in primary metabolic pathways. Metabolites from H4IIE cells that were grown on this mixture were analyzed by gas chromatography-mass spectrometry. The ensuing isotopomer measurements were computationally interpreted by comprehensive isotopomer balancing and mathematical metabolic network modeling to obtain values of ﬂuxes through primary metabolic pathways. Glucose-6phosphate dehydrogenase activity was measured by an enzymatic assay. The GK-overexpressing cell lines exhibited signiﬁcantly diﬀerent growth and carbon source utilization compared to the wild type cells. In addition, the GK overexpressing cells had signiﬁcantly diﬀerent 13C isotopomer abundances compared to the wild type. Interpretation of the isotopomer abundances and ﬂux evaluation using isotopomer balancing revealed that the ﬂux of the pentose phosphate pathway in the GK-overexpressing cell lines was two-fold higher than that in the wild type, in addition to smaller ﬂux changes in other pathways. In addition, we determined that the
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 activity of glucose-6-phosphate dehydrogenase, the rate-limiting enzyme of the pentose phosphate pathway, was 1.8-fold higher in the GKoverexpressing cell lines compared to the wild type. This substantiates the results of isotopomer-based ﬂux analysis and shows that GK has eﬀects on metabolic ﬂux in other pathways which may be due in part to its moonlighting functions. Such investigations can be valuable toward dissecting the biochemistry and elucidating the pathology of GKD and other IEMs which is especially relevant with the advent of expanded newborn screening for detection of IEMs. 20. Autosomal dominant polycystic kidney disease (ADPKD) Mimicking autosomal recessive polycystic kidney disease (ARPKD) with congenital hepatic ﬁbrosis (CHF) and portal hypertension (PH). Esperanza E. Font-Montgomerya, Iclal Ocakb, Peter Choykeb, Theo Hellerc, Robert Kletaa, Hailey Edwardsa, Parvathi Mohand, Lisa Guay-Woodforde, Kailash Daryananif, Zenaide Quezadog, William A. Gahla, Meral Gunay-Ayguna. aMedical Genetics Branch, NHGRI, NIH, Bethesda, MD, USA; bNational Cancer Institute, NIH, Bethesda, MD, USA; c NIDDK, NIH, Bethesda, MD, USA; dChildren’s National Medical Center, Washington, DC, USA; eUniversity of Alabama, Birmingham AL, USA; fClinical Center, NIH, Bethesda, MD, USA. ADPKD and ARPKD are the most common forms of PKD, a leading cause of end stage kidney disease. The characteristics of liver disease diﬀer in ARPKD and ADPKD. All ARPKD patients have CHF often complicated with PH and a subset of them also exhibit Caroli’s syndrome (CS), predisposing to cholangitis. In contrast, liver cysts in ADPKD are relatively benign; typically not associated with PH or cholangitis. Although it is generally adult onset, ADPKD can present in childhood and can be mistaken for ARPKD, which has its onset in utero, or in early infancy but can manifest later. Sorting out the correct diagnosis by molecular analysis is arduous, since the PKD genes are large, with complicated transcription proﬁles. In our ongoing ARPKD natural history protocol (www.clinicaltrials.gov, trial NCT00068224), we identiﬁed ﬁve families with overlapping features of ARPKD and ADPKD. In family 1, the 48-year-old father received kidney transplantation at age 47 due to ADPKD without liver involvement. His 9-year-old daughter, who presented at age 4 years with esophageal variceal bleeding due to PH, had both PKD and CHF. At NIH, his sons (14 and 12) were diagnosed with PKD with CHF/PH and PKD without liver involvement, respectively. In Family 2, the female proband (33) had kidney cysts typical of ADPKD, but carried a diagnosis of ‘‘ARPKD’’ based on a liver biopsy at 6 months which revealed CHF. Her daughter (16) and son (14) both had PKD without liver involvement. In family 3, the male proband (43) presented at age 39 with cholangitis and was diagnosed with PH and CS. His kidneys were normal. His mother had multiple kidney cysts without liver involvement. In Family 4, the proband (13) carried a diagnosis of ARPKD because of CHF/PH and PKD detected at 6 months. Her asymptomatic maternal grandmother was diagnosed with CHF at age 76, based on liver biopsy. However, her asymptomatic mother had normal kidney and liver imaging. In Family 5, the proband (5) presented at birth with classical ARPKD ﬁndings. NIH evaluation of her mother disclosed numerous small hepatic cysts. These cases illustrate the clinical overlap between these two disorders and the variability of the phenotype within and among families. Mutation analysis and further family studies might help explain the potential causes of this overlap and variability.
isoleucine and valine. The presence of alloisoleucine is considered pathognomic for MSUD. Monitoring of therapeutic dietary intervention of patients with MSUD requires accurate measurement of these amino acids, particularly leucine in blood. The ideal methodology for measurement should be suﬃciently rapid to provide immediate response while the patient is still in the clinic/emergency room. The 3 isomeric forms of leucine have identical molecular weights and product ions, making direct injection into a tandem mass spectrometer unsuitable. We present here the results of a study of amino acid measurement in MSUD and phenylketonuria (PKU) patients with a rapid (6 min) separation using the ACQUTY UPLC and tandem mass spectrometry in positive MRM mode. Concentrations of the individual amino acids are calculated using peak area ratios: (area under AA peak/area under internal standard peak) x concentration of internal standard—a process similar to that used by neonatal screening laboratories. For isoleucine and alloisoleucine a relative response factor is generated to accurately quantify these AAs in the absence of isotopically labeled internal standards. An analysis time of six (6) minutes and an injection-to-injection cycle time of nine (9) minutes is used for the analysis—signiﬁcantly shorter than conventional methods. Split samples were also analyzed on a Beckman 6300 and the results compared by correlation analysis. For all AAs analyzed (Phe, Tyr, Met, Val, Allo, Ile and Leu) the correlation coeﬃcient (r) between methods is >0.96. We demonstrate that UPLC-MS/MS technology provides a rapid means of measuring plasma amino acids and may be beneﬁcial in the diﬀerential diagnosis and long-term clinical management of patients with MSUD.
22. The work-up of persistent hyperinsulinemic hypoglycemia in a newborn infant—Interesting genetic implications. P. Galvin-Partona, T.A. Wilsona, A. Lanea, J. Weissa, M. Puangcoa, W.K. Seltzerb. aDepartment of Pediatrics, SUNY at Stony Brook, Children’s Medical Center at Stony Brook, USA; bAthena Diagnostics, Worcester, MA, USA. Congenital hyperinsulinism (CHI) is the most frequent cause of infantile hyperinsulinemic hypoglycemia. Mutations in any one of ﬁve genes have been associated with CHI. Diﬀuse and focal forms of the disease have been described. Treatment can either be conservative medical management or require surgery. Focal disease requires a limited pancreatectomy while diﬀuse disease requires a near-total pancreatectomy. We describe a male infant who was delivered at 32 weeks gestation following a pregnancy complicated by polyhydramnios. Birth weight was 7 lb. 1 oz. By day #4, infant was noted to have severe hyperinsulinemic hypoglycemia. He failed to respond to medical management. At 8 weeks of age he underwent a subtotal pancreatectomy and eventually required a total pancreatectomy. The clinical course of our patient is now further complicated by resulting diabetes. Echocardiogram initially revealed a cardiomyopathy that has improved with treatment. Brain imaging studies have been abnormal and he is neurologically impaired. Recently, molecular analysis has revealed a mutation in his ABCC8 gene. There are interesting implications depending on whether there are two copies of the gene mutation or a single copy. In cases of single gene mutation, it becomes important to identify whether the mutation was transmitted through the paternal or maternal line. These studies may predict a deﬁnitive pattern of inheritance as well as the form of the disease. This would provide families with information regarding recurrent risks and the potential of prenatal diagnosis. Future siblings would beneﬁt from the morbidity associated with delays in diagnosis and treatment.
21. Chromatographic resolution and tandem MS measurement of the leucine isomers associated with the monitoring of MSUD patients. Scott Freetoa, Donald Masona, Jie Chenb, Robert Scottb, Srinivas Narayanb, Michael Bennettb. aWaters Corporation-Beverly, MA 01915, USA; bChildren’s Hospital of Philadelphia, Philadelphia, PA 19104, USA.
23. Dried blood spot assay for Pompe disease: Diagnostic experience of the Duke Biochemical Genetics Laboratory. J.L. Goldstein, S.P. Young, P.S. Kishnani, M. Changela, J. Dai, D. Bali. Division of Medical Genetics, Biochemical Genetics Laboratory, Duke University, RTP, NC 27709, USA.
Maple Syrup Urine Disease (MSUD) is the result of a genetic defect of the branched-chain a-keto acid dehydrogenase enzyme system. This severe metabolic defect is characterized by an accumulation of branched-chain aketo acids and their respective branched-chain amino acids leucine,
Pompe Disease (Glycogen Storage Disease type II) is a rare, progressive, and often fatal muscular condition caused by deﬁciency of the lysosomal enzyme acid a-glucosidase (GAA). Clinical presentation varies from a rapidly progressive infantile form to a more slowly progressive late-onset
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
form. The approval of Myozyme replacement therapy as a treatment necessitates early diagnosis. We recently modiﬁed and validated an assay measuring GAA activity in dried blood spots (DBS), based on the method of Chamoles and coworkers. This assay is quicker and less invasive than typical methods for measuring GAA activity in skin ﬁbroblasts and muscle. Objective: To evaluate the diagnostic experience of our laboratory with the GAA DBS assay, performed on a clinical basis in our laboratory over a 6 month period. Methods: Patients referred for testing were divided into 2 groups, according to age. Group 1 were infantile patients, <12 months of age (n = 28) and group 2 were individuals P 1 year of age (n = 93). The number of patients in each group that had deﬁcient GAA activity in dried blood spots was determined. The percentage of patients referred from diﬀerent specialty clinics was also determined. Results: We received 121 blood samples for GAA activity testing. Of these, 31 (26%) had reduced GAA enzyme activity, suggestive of Pompe disease. Eight of the 28 infantile patients (29%) and 23 of the 93 group 2 patients (25%) had deﬁcient GAA activity in DBS. Thirteen of these aﬀected patients were further investigated in our laboratory by skin ﬁbroblast or muscle GAA activity, DNA mutation analysis, or urinary Hex4 analysis as a biomarker of glycogen storage. Of the total 121 patients, 13 (11%) patients were referred from pediatric clinics, 11 (9%) from neuromuscular clinics, 10 (8%) from general genetics clinics, and the majority (72%) came from other referral testing centers. Conclusions: GAA activity determination in DBS is a valuable, reliable, relatively non-invasive and speciﬁc method for the diagnosis of Pompe disease and has the added advantage of rapid turnaround time. We consider the DBS assay, with acarbose as an inhibitor of maltose-glucoamylase (MGA), to be a valuable diagnostic tool. A limitation of this assay is the inability to accurately assess the degree of residual enzyme activity to aid in predicting phenotype. A systematic study should be performed to investigate whether second tier testing is necessary for conﬁrmation of diagnosis and if the additional information this would provide would impact the clinical management of Pompe disease.
24. Screen for suppressors of VDAC mutant phenotypes in Drosophila: A model for mitochondrial dysfunction and disease. B.H. Grahama, E.P. Alesiia, Z. Lia, W.J. Craigena,b. aDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; bDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, USA. Voltage-dependent anion channels (VDACs) are a family of small poreforming proteins of the mitochondrial outer membrane found in all eukaryotes. VDACs play an important role in the regulated ﬂux of metabolites between the cytosolic and mitochondrial compartments and three distinct mammalian isoforms have been identiﬁed. The speciﬁc physiologic and potential pathophysiologic roles of the various isoforms are not understood, but animal and cell culture experiments suggest that the various isoforms function in apoptosis, learning and reproduction. In Drosophila melanogaster, porin is the ubiquitously expressed VDAC isoform. Analysis of ﬂies homozygous for hypomorphic mutant alleles of porin reveal abnormal phenotypes remarkably reminiscent of mouse VDAC mutant phenotypes including partial lethality, neuromuscular dysfunction manifested by increased sensitivity to mechanical stress (‘‘bang’’ sensitivity) and by synaptic abnormalities, and male infertility. In order to better understand VDAC’s functional roles, a genetic screen to identify suppressors of increased bang sensitivity and male infertility has been initiated. A series of deletions covering approximately 38% of the genome (93% of chromosome 3) have been crossed into a homozygous mutant porin background and assessed for suppression of these phenotypes. From this pilot screen, several deﬁciencies that suppress bang sensitivity and/or male infertility have been identiﬁed. For the two deﬁciencies that demonstrate the strongest suppression, testing of overlapping deletions for suppression to further map the critical regions are ongoing. Interestingly, the deﬁciency that is the best suppressor of bang sensitivity in the porin mutant background also suppresses increased bang sensitivity observed in P element hypomorphic mutants of two independent predicted orthologs of human mitochondrial disease genes: SDHB (subunit of Complex II of the mitochondrial respiratory chain) and
ATPAF2 (assembly factor of Complex V). This analysis of porin mutant phenotypes validates Drosophila as a model for mitochondrial dysfunction that is relevant to mammals. The identiﬁcation of suppressor loci for mutant mitochondrial phenotypes in Drosophila should provide insights into mitochondrial function and pathophysiology that can be extended into studies in mammalian systems as well as potentially identify novel candidate therapeutic targets for mitochondrial diseases. 25. Neuroimaging ﬁndings post renal transplant in an adult with cobalaminresponsive methylmalonic academia. Andrea L. Gropmana,b, Kevin. O’Brienb, Jennifer Sloana, Eva Bakerd, Charles P. Vendittia. aGenetic Disease Research Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA; bMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA; cDepartment of Neurology, Children’s National Medical Center and the George Washington University of the Health Sciences, Washington, DC, USA; dClinical Center Radiology, National Institutes of Health, Bethesda, MD, USA. Methylmalonic acidemia (MMAemia) represents a group of autosomal recessive inborn errors of branched chain amino acid metabolism due to a deﬁciency of the methylmalonyl-CoA mutase enzyme, or its cofactor cobalamin (vitamin B12). MMA clinically presents as lethargy, vomiting, and dehydration, commonly with onset in the newborn period. Aﬀected infants demonstrate metabolic acidosis, ketosis and ketonuria, hyperammonemia, and hyperglycinemia. First described in the late 1960s, dietary management with protein restriction and B12 has remained the mainstay of therapy. Current management relies on these principles with the addition of carnitine and antibiotics. However, a relatively recent treatment for inborn errors of metabolism is organ transplantation. A major complication of B12 unresponsive MMAemia is renal failure, and a few patients have received transplantation. Other patients have undergone liver transplantation to prevent the recurrent life threatening metabolic acidosis that is the hallmark of this disorder. Little information is available regarding the clinical and neurological outcomes or metabolic parameters of patients after transplantation, nor are there guidelines that advise as to when indications for transplantation are met. We therefore describe a single patient with cblA (MMAA) deﬁciency requiring renal transplantation and describe her metabolic parameters and neuroimaging ﬁndings.
26. Preliminary experience with functional MRI (fMRI) detects altered neural networks subserving executive function and attention in subjects with partial ornithine transcarbamylase deﬁciency (OTC). Andrea L. Gropmana,b, Ayichew Hailub, Rebecca Seltzerb, Stanley T. Frickeb, John VanMeterb, M. Layne Kalbﬂeishc, and the Urea Cycle Rare disorders Consortium*. aDepartment of Neurology, Children’s National Medical Center Washington, DC, USA; bDepartment of Neurology/Neuroscience, Georgetown University, Washington, DC, USA; cKrasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA. Objective: Ornithine transcarbamylase deﬁciency (OTC), an X-linked disorder, is the most common of the urea cycle disorders. Preliminary neurocognitive assessment in women heterozygous for OTC have demonstrated weaknesses in attention/executive function. fMRI is based on the principle that the MRI signal changes in response to changes in the magnetic character of the intravascular contents. Since deoxygenated hemoglobin is more paramagnetic than oxygenated hemoglobin, it acts as an endogenous intravascular paramagnetic contrast agent. During increased neural activity, there is an elevation of cerebral blood ﬂow, which is greater than that required by local oxygen consumption. On a magnetic susceptibility T2*-weighted image, this results in increased signal intensity, which, as in positron emission tomography (PET), allows estimation of task-related neural activation when compared with a baseline image. fMRI has been used extensively to examine neural
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 networks subserving attention memory, and language in patients with epilepsy, ADHD, Alzheimer disorder, and TBI, but rarely as a tool to assess alterations in neural networks that may underlie cognitive changes seen in inborn errors of metabolism. Methods: Ten adult subjects with partial OTC (8 females and 2 males) and eight controls consented to participate in this IRB approved study. Subjects performed a modiﬁed ﬂanker task which probes frontal lobe function, executive function and attention. All data were acquired on a Siemens Trio 3.0T scanner using echo-planar imaging sequences. Data were spatially normalized and corrected for head motion and artifacts. A ﬁxed eﬀects model was used to analyze activation maps. Statistical parametric analysis using p value of <0.05 was considered signiﬁcant. Results: Activation maps revealed decreased activation in the frontal lobes as compared to controls. OTC subjects demonstrated parietal lobe activation suggesting recruitment of additional brain areas to compensate for perturbation of neural networks involved in frontal lobe function. Conclusions: Although preliminary, this study suggests that subjects with OTC exhibit diﬀerential activation patterns as compared to controls when performing a task that probes executive function. This is in agreement with earlier cognitive testing. Additionally, this study suggests that fMRI may be a useful tool to monitor the cognitive and neurological consequences of inborn errors of metabolism and may provide a biomarker for early recognition of neurological damage and potential response to therapies. 27. Preliminary experience with 1H Magnetic resonance spectroscopy at 3T detects altered brain metabolism in subjects with partial ornithine transcarbamylase deﬁciency (OTC). Andrea L. Gropmana,b, Ayichew Hailub, Rebecca Seltzerb, Stanley T. Frickeb, John VanMeterb, and the Urea Cycle Rare disorders Consortium*. aDepartment of Neurology, Children’s National Medical Center Washington, DC, USA; bDepartment of Neurology/Neuroscience, Georgetown University, Washington, DC, USA. Objective: OTC, an X-linked disorder, is the most common of the urea cycle disorders. Patients with neonatal onset present in the ﬁrst few days of life with lethargy progressing to hyperammonemica coma, whereas the manifestations of partial deﬁciency are more variable with respect to age of onset and neurological symptoms. Methods: Ten adult subjects with partial OTC (8 females and 2 males) and 8 age matched controls provided consent for this IRB approved study. All subjects were studied under similar conditions (morning, postabsorptive state), although disease severity and time from last hyperammonemic episode varied. We investigated the metabolite concentrations of tNAA, tCreatinine, choline, lactate, myoinositol, and the glutamate/glutamine system in parietal white matter, thalamus, and posterior cingulate regions. 1H MRS was performed on a 3T Siemens Trio system with a phased array head coil using a volume localized PRESS sequence with echo time (TE) of 30 ms, repetition time (TR) of 1500 ms, 192 transients, spectral width of 3 kHz, and 1 k complex data points, with a voxel of 2.0 cm on edge (8 ml) centered at the various points of interest. All in vivo peak areas were analyzed by the built-in Siemens peak ﬁtting routine to assess relative diﬀerences in brain chemistry using the patient as his own standard. The data were Fourier transformed and processed in the frequency domain with LC Model’ a user independent method using a custom basis set comprised of single model chemical phantoms. Results: Signiﬁcant diﬀerences in biochemical markers were seen in OTC patients versus controls. Speciﬁcally, thalamic glutamine levels were elevated in both symptomatic and asymptomatic females relative to controls and myoinositol was decreased in all OTC subjects. In symptomatic females, NAA, the neuronal marker, was signiﬁcantly decreased compared to either asymptomatic heterozygotes or age matched controls, suggesting gray matter damage occurs over time with more signiﬁcant disease. Conclusions: This study represents the largest series of OTC subjects studied to date using1H MRS at 3T the beneﬁts of which are to maximize spectroscopic sensitivity and resolve j-coupled resonances. Several biochemical markers distinguish partial OTC subjects from controls and these changes were also seen in subjects with less signiﬁcant disease. This is consistent with previous ﬁndings in the literature, and furthermore,
suggests that peripheral markers of perturbed metabolism cannot adequately serve as indicators of central nervous system damage due to underlying inborn errors of metabolism. 28. Niemann–Pick type C disease, Alzheimer’s disease, apolipoprotein E, and amyloid precursor protein: Does an alteration in the cholesterolenriched microdomain lipid environment result in formation of neuroﬁbrillary tangles? R.A. Heidenreich, D. Jelinek, W.S. Garver. Section of Medical and Molecular Genetics, Department of Pediatrics, Steele Children’s Research Center University of Arizona School of Medicine Tucson, AZ, USA. Niemann–Pick type C disease (NPC) is a rare inborn error of intracellular cholesterol traﬃcking. It is characterized clinically by steady neurodegeneration typically beginning around 3–5 years of age and death during the second decade of life. Mutations in two genes, NPC1 and NPC2, are causative with 95% of cases due to defects in NPC1. The function of these two proteins in intracellular cholesterol traﬃcking remains undeﬁned. The major biochemical ﬁnding in NPC disease is massive accumulation of unesteriﬁed cholesterol in the late endosomal/ lysosomal compartment derived from uptake of low-density lipoprotein (LDL). Pathologic examination of the NPC brain has described neuroﬁbrillary tangles (NFT) similar to those found in Alzheimer’s disease; amyloid plaques have not, however, been found in NPC disease. This pathologic ﬁnding raises the possibility of a common mechanism for formation of NFT in NPC and Alzheimer disease. We have previously described an accumulation of unesteriﬁed cholesterol in cholesterolenriched microdomains (CEM) in NPC disease. On proteomic analysis of CEM from murine liver, apolipoprotein E (apoE) was identiﬁed as a major protein in 2-D gels. Immunoblot analysis conﬁrmed the localization of a fraction of cellular apoE to CEM. Further investigation by immunoblot analysis also found amyloid precursor protein (APP) in CEM. Investigations in normal human ﬁbroblasts showed that the amount of apoE in CEM decreased in ﬁbroblasts incubated in the presence of LDL, whereas the concentration of unesteriﬁed cholesterol in CEM increased suggesting that apoE may function in the intracellular traﬃcking of CEM cholesterol. The apolipoprotein E4 (apoE4) allele is a major risk factor for development of Alzheimer’s disease although the mechanism remains undeﬁned at this time. Our identiﬁcation of apoE in CEM raises the possibility that apoE4 may (1) alter the lipid environment of CEM, or (2) that the structure of apolipoprotein E4 may be sensitive to the lipid microenvironment of CEM. Alterations of the CEM lipid microenvironment may then alter APP proteolysis resulting in the accumulation of NFT in both NPC disease and Alzheimer disease. 29. Hermansky pudlak proteins interact within biogenesis of lysosomerelated organelle complex-2. P.K. Held, W. Westbroek, A. HelipWooley, M. Ayub, M. Huizing, W.A. Gahl. Section of Human Biochemical Genetics, Medical Genetics Branch, NHGRI, NIH, Bethesda, MD 20892, USA. Hermansky pudlak (HPS) is a rare, genetically heterogeneous autosomal recessive disease characterized by oculocutaneous albanism and bleeding diathesis. The clinical features result from a defect in the biogenesis of lysome-related organelles, such as melanosomes in melanocytes and dense bodies in platelets. Eight genes have been identiﬁed that associate with diﬀerent types of HPS in humans. HPS-3, HPS-5, and HPS6 generally have mild hypopigmentation with little or no bleeding, while HPS-1 and HPS-4 have severe albinism, bleeding, and early death from pulmonary ﬁbrosis. The correlation between disease severity and subtype is based upon HPS protein interaction. Diﬀerent HPS proteins interact with one another in the Biogenesis of Lysosome-related Organelles Complexes (BLOCs). HPS-3, HPS-5, and HPS-6 associate to form BLOC2, but the mode of protein interaction and the overall function of BLOC-2 is largely unknown. We employed a mammalian interaction system, MAmmalian Protein–Protein Interaction Trap (MAPPIT), to elucidate the mode of interaction between HPS proteins in BLOC-2. HPS-6 protein directly interacts with the longer splice form of HPS-5 and to a lesser
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
extent with the shortened splice form. The long form of HPS-5 has a putative WD40 domain at its N-terminal site. This domain is interrupted in the shortened splice form of HPS-5 and therefore may eﬀect proteinprotein interactions with HPS-6 or potentially other proteins. Additional studies have demonstrated that post-translational modiﬁcations to HPS-5 also eﬀect interaction with HPS-6. Elucidating the mode of interaction between HPS proteins is critical to understanding how BLOCs are formed and whether additional proteins exist within the diﬀerent complexes. Previously, we demonstrated that HPS-3 contains a putative clathrinbinding domain that is essential for the accurate localization of cargo targeted to the melanosome. Melanogenic cargo (early endosomes and vesicles) appeared to be perinuclearly clustered in HPS-3, HPS-5, and HPS-6 melanocytes. Therefore, it is likely that BLOC-2 proteins assist in either the budding or traﬃcking of clathrin-coated vesicles from the early endosome to the developing melanosomes. We are currently investigating the role of HPS-5 and HPS-6 in vesicle budding and/or traﬃcking.
30. Identiﬁcation of novel mutations in the medium chain acyl-CoA dehydrogenase gene in a heterogenous population. Lindsey A. Herrel, Chonan Tokunaga, Zaza Khuchua, Arnold W. Strauss. Department of Pediatrics, Vanderbilt University, Nashville, TN, USA. Background: Medium chain acyl-CoA dehydrogenase (MCAD) deﬁciency is the most common inborn error in fatty acid oxidation. Up to 85% of symptomatic Caucasian patients are homozygous for the common mutation, A985G, which can result in high morbidity and mortality. Other genotypes have rarely been reported in non-Caucasian populations. Objective: The goal of this study was to discover mutations other than A985G that are present in a heterogenous population and provide further clinical information regarding these cases. Methods: Patients with an abnormal tandem mass spectrometry (MS/MS) newborn screen with elevated acyl-carnitines usually with one or no A985G alleles by the standard PstI restriction analysis were sent for molecular studies. After DNA isolation and PCR ampliﬁcation, direct sequencing of the coding regions of the MCAD gene in these patients revealed a wide array of mutations. Mutant MCAD protein expression was quantiﬁed by immunoblotting. Follow-up information on these patients was gathered to provide further clinical insight. Results: Of 252 patient samples sequenced, 28 patients were homozygous or compound heterozygous for non-A985G MCAD mutations. An additional 119 individuals carried one non-A985G mutated allele, 49 of whom were relatives of ascertained newborns. Twenty-one individuals with homozygous non-A985G mutations reported origin in locations outside northern Europe, including India, Japan, Korea, Mexico, Palestine, Lebanon, and Albania. A particularly interesting missense mutation, G443A, altering arginine-123 to lysine, occurred in three unrelated, homozygous patients born in the US. with Mexican or Latino ancestry. Additionally, G443A was discovered in ﬁve patients as a heterozygous mutation, three of whom are related to other patients with the mutation. Conclusions: Although the A985G mutations represent a majority of MCAD deﬁciency in Caucasians, novel mutations are common among non-Caucasian populations in the US G443A likely represents a common MCAD mutation among the Hispanic/Latino population. Further investigation with expanded newborn screening, MCAD gene sequencing and close follow-up will help determine the clinical signiﬁcance and prevalence of these mutations in the population.
31. Gluconeogenesis in fatty acid oxidation-deﬁcient rat hepatoma cells and mouse primary hepatocytes. Sander M. Houtena,b, Maxim Boeka, Albert K. Groenc, Ronald J.A. Wandersa,b. Laboratory Genetic Metabolic Diseases, aDepartment of Clinical Chemistry, Academic Medical Center, Amsterdam, The Netherlands; bDepartment of Pediatrics, Academic Medical Center, Amsterdam, The Netherlands; c Medical Biochemistry, Academic Medical Center, Amsterdam, The Netherlands. Mitochondrial fatty acid b-oxidation (FAO) deﬁciencies are a group of clinically and biochemically heterogeneous inherited metabolic diseases. A
typical clinical feature of these FAO deﬁciencies is hypoketotic hypoglycemia, which is provoked by illness combined with a period of prolonged fasting. In addition, liver disease with hyperammonemia and cerebral edema may develop (Reye-like syndrome). During the last decade the diagnostic tools to identify FAO defects and our knowledge of the deﬁcient FAO enzymes have expanded tremendously. The underlying mechanisms of most clinical manifestations, however, have not been resolved at present. In our study, we have investigated whether the fasting-induced hypoglycemia occurring in FAO disorders may be due to decreased hepatic production of glucose (gluconeogenesis). To this end we have used rat hepatoma cells (FAO and H4-II-E-C3 cells) and mouse primary hepatocytes as a model system to study the eﬀect of a block in FAO on gluconeogenesis. We show that glucose production from lactate can be stimulated by the addition of fatty acids in rat hepatoma cells as well as mouse primary hepatocytes. When compared with mouse primary hepatocytes, the rate of gluconeogenesis in hepatoma cells is relatively low. This can be attributed to the lower mitochondrial content of the hepatoma cells and as a consequence lower activity of the rate-limiting enzyme in gluconeogenesis, pyruvate carboxylase. We furthermore show that inhibition of FAO using l-aminocarnitine results in decreased gluconeogenesis. Interestingly, this eﬀect is less pronounced when relatively high, non physiological lactate concentrations are used. The decreased gluconeogenesis may result from I) low acetyl-CoA levels, and consequently insuﬃcient activation of pyruvate carboxylase, and/or II) low ATP levels to drive gluconeogenesis. Current studies focus on the measurement acetyl-CoA and ATP levels and the conﬁrmation of our results in mouse models with a genetic FAO defect. In conclusion, our results indicate that the fasting-induced hypoglycaemia observed in patients suﬀering from a FAO disorder may result from decreased gluconeogenesis, however, increased utilization of glucose in peripheral tissues cannot be ruled out as a contributing factor. 32. Analysis of conserved regulatory elements in the glucocerebrosidase gene locus. K.S. Hruskaa, M.E. LaMarcaa, S.G. Zieglera, B. Stubbleﬁelda, M.E. Portnoyb, E.D. Greenb, E. Sidranskya. aMedical Genetics Branch, National Human Genome Research Institute/NIH, Bethesda, MD 20892, USA; bGenome Technology Branch, National Human Genome Research Institute/NIH, Bethesda, MD 20892, USA. While some regulatory elements in the promoter and ﬁrst exon of the human glucocerebrosidase gene (GBA) have been reported previously, the availability of sequenced genomes from diverse species has simpliﬁed functional analyses and greatly expanded their scope. An alignment of the 39.4 kb segment of human genomic sequence that encompasses GBA, metaxin (MTX1) and their respective pseudogenes with orthologous sequence from nine mammals was examined for multi-species conserved sequences (MCSs) using WebMCS. Two non-exonic MCSs were identiﬁed in the 3’ region of GBA; one 25-bp MCS represents a known thrombospondin enhancer within intron 6 of MTX1, while a second 25-bp MCS appears to be novel. Utilizing the Genomatix Suite applications, a shared framework of three transcription factor-binding sites (TFBSs) was identiﬁed within this MCS in nine of the ten species examined, excluding mouse. Similarly, a framework of ﬁve TFBSs was predicted in the 5’ promoter region of GBA in human and four species, and other possible motifs were identiﬁed further upstream. A 5.8 kb genomic fragment containing the potential 5¢ regulatory elements and exons 1–3 of GBA has been subcloned in-frame with a luciferase reporter gene, generating an active luciferase that includes the signal peptide of GBA. The reporter construct also fuses the luciferase cDNA with the stop codon of GBA and 2.3 kb of 3¢ sequence containing the novel downstream MCS. The eight identiﬁed TFBSs are being systematically mutated and tested in vitro for their eﬀects on the transcriptional regulation of GBA.
33. Allele-speciﬁc silencing of the dominant disorder sialuria by small interfering RNA. M. Huizing, E. Klootwijk, P.J. Savelkou, C. Ciccone, D. Krasnewich, W.A. Gahl. Medical Genetics Branch, NHGRI, NIH, Bethesda, USA.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 Sialuria is a rare autosomal dominant disorder characterized by variable clinical symptoms, including mild hepatomegaly and developmental delay. Patients have a single missense mutation (heterozygous) involving the allosteric site of the rate-limiting enzyme of sialic acid biosynthesis, UDPGlcNAc 2-epimerase/ManNAc kinase, encoded by the GNE gene. This results in loss of feedback inhibition of UDP-GlcNAc 2-epimerase activity by CMP-sialic acid, and, consequently, overproduction of sialic acid. Since dominantly inherited disease alleles are attractive therapeutic targets for allele-speciﬁc silencing mediated by RNA interference (RNAi), we employed this method in ﬁbroblasts of sialuria patients. Small interfering RNA (siRNA) was designed to speciﬁcally target a sialuria GNE missense mutation (c.797G > A, R266Q). This siRNA was transfected into patients’ ﬁbroblasts and the extent of silencing was assessed after 48 h. After silencing, allele-speciﬁc real-time PCR analysis demonstrated that expression of the mutant GNE transcript was decreased by 71 ± 3 (SD)% (n = 3). Furthermore, HPLC analysis of ﬁbroblast extracts showed that sialic acid levels decreased 59 ± 15% (n = 3) after silencing. Finally, UDPGlcNAc 2-epimerase enzymatic activity measurements showed a 41 ± 6% (n = 3) recovery of feedback inhibition by CMP-sialic acid. These allelespeciﬁc RNAi therapeutics in sialuria provide an example of how dominant-negative mutations can be corrected through elimination of speciﬁc mutant transcripts. In addition, these results demonstrate that RNAi can provide in vitro correction of the underlying metabolic defect in a human inborn error of metabolism.
34. Can a common SNP in the organic anion transporter MRP4/ABCC4 inﬂuence homogentisic acid secretion and the severity of ochronosis in alkaptonuria? Michael A. Kaysera, Pim Suwannaratb, Wendy Intronea, Howard A. Austinb, Maya Tuchmana, Bradford Tinloya, Cornelia Kleinb, K. O’Briena, Isa Bernardinia, William A. Gahla, Robert Kletaa. aSHBG, MGB, NHGRI; bNIDDK, NIH, Bethesda, MD, USA. Alkaptonuria is a rare metabolic disorder of tyrosine catabolism in which the organic compound homogentisic acid (HGA) and its metabolites bind to connective tissue and cause darkened cartilage (ochronosis), joint destruction, and cardiac valve deterioration. In our investigation of more than 90 alkaptonuria patients, we previously identiﬁed four women with an ochronotic phenotype but normal HGA excretion. All had been treated with the tetracycline derivative minocycline. Tetracyclines are secreted into the urine by proximal tubular organic anion transporters. These transporters recognize a variety of drugs, xenobiotics, and organic acids, including p-aminohippurate (PAH). We had sequenced all coding exons of the known organic ion transporter genes, i.e., OAT1, OAT3, OAT4, and MRP4, in two of our four pseudo-ochronotic patients. Both patients exhibited a homozygous intronic acceptor splice site mutation, IVS2-5T > C, in MRP4. PAH clearance was abnormally low in the one patient we studied, reﬂecting the deleterious eﬀect of this mutation on organic anion transport. We generated a restriction site in MRP4 to screen for IVS2-5T > C. In 136 alleles from patients with alkaptonuria, we found the expected frequency of wild type (70%) and minor (30%) alleles. We propose that this common MRP4 SNP, IVS2-5T > C, can modulate the clinical severity of alkaptonuria, since HGA secretion depends upon an intact organic anion transporter. To pursue this, we measured plasma HGA levels in our alkaptonuria patients and correlated them with the presence of the MRP4 SNP. Our preliminary data support a potential inﬂuence of this SNP on plasma HGA levels. Our ﬁndings point toward a gene product that modiﬁes the severity of alkaptonuria and could have a major impact on the clinical course of other organic acidurias, in which documented variability among aﬀected siblings currently has no explanation.
35. Management of diﬃcult infusion related reactions in a young patient with mucopolysaccharidosis type VI on Naglazyme therapy. K.H. Kima,b, C. Deckerc, B.K. Burtona,b. aDivision of Genetics, Birth Defects and Metabolism, Children’s Memorial Hospital, Chicago, IL 60614, USA; b Department of Pediatrics, Feinberg School of Medicine, Northwest-
ern University, Chicago, IL 60611, USA; cBioMarin Pharmaceutical Inc., Novato, CA 94949, USA. Background: Recombinant human arylsulfatase B (rhASB) was approved for use by the Food and Drug Administration in May 2005 and is currently marketed as Naglazyme (galsulfase). Infusions of rhASB were well tolerated during the clinical trials. The majority of infusion associated reactions (IARs) were judged to be mild to moderate and were successfully managed by interrupting the infusion or slowing the rate of infusion and/ or the administration of antihistamines, antipyretics, corticosteroids, or oxygen. The typical adverse events observed during infusions included rash, urticaria, headache, hypotension, nausea, and vomiting. Very few serious or severe adverse events occurred and the majority were felt to be related to the patient’s underlying condition. Case report: We report on our patient with severe mucopolysaccharidosis type VI who initiated enzyme replacement therapy with rhASB at three years of age. He developed signiﬁcant IARs after four infusions of rhASB. The observed reactions included urticaria, facial swelling, stridor, and oxygen destaturation. All reactions resolved with interruption of therapy and administration of antihistamines and corticosteroids. Even with antihistamine pretreatment, our patient could not tolerate subsequent infusions that were progressively lengthened to 10 h by slowing the infusion rate from the typical 4 h schedule. We, therefore, devised a protocol by which the patient was treated with oral prednisolone 2 mg/kg the day before each infusion, followed by methylprednisolone 1 mg/kg IV and diphenhydramine 1.25 mg/kg IV one hour before each infusion. The infusions were given initially over 16 h with no IARs observed. Over the next several months, the patient’s infusion rate was slowly increased and the premedications were weaned. The patient is now on a four hour infusion schedule with only oral antihistamine as premedication. After one year of therapy, he exhibits clinical improvement including resolution of his hepatomegaly and an increased range of motion of his shoulders and elbows. Conclusion: Enzyme replacement therapy does not need to be discontinued even in the face of diﬃcult IARs. We demonstrate that by signiﬁcantly reducing the rate of infusions and adjusting the premedication regimen, rhASB infusions can continue with no further occurrence of infusion related reactions.
36. Highly eﬃcacious gene therapy in glycogen storage disease type Ia (GSD-Ia) with a double-stranded AAV vector. D.D. Koeberla, B. Suna, C. Pintob, T. Brownb, A. Birda, Y.T. Chena. aDivision of Medical Genetics, Department of Pediatrics, Duke University Medical Center, Durham, NC, USA; bCollege of Veterinary Medicine, North Carolina State University, Raleigh, NC, USA. New therapy is needed to prevent long-term complications in glycogen storage disease type Ia (GSD-Ia). Patients with GSD-Ia succumb to hepatocellular carcinoma, in addition to life-threatening pulmonary hypertension, kidney failure, and pancreatitis. As the limitations of dietary therapy with uncooked cornstarch have become apparent, liver transplantation has been increasingly recommended for adults with GSDIa. Yet liver transplantation remains invasive, prone to failure, and not generally available. Therefore, gene therapy has been advocated as an alternative new therapy in GSD-Ia. We have pursued gene therapy with adeno-associated virus (AAV) vectors in GSD-Ia mice and dogs. The animal models for GSD-Ia feature severe complications, including high mortality, growth retardation, hypoglycemia, and hyperlipidemia. These abnormalities have been corrected with a double-stranded AAV vector encoding human glucose-6-phosphatase that was pseudotyped as AAV8. The double-stranded AAV vector was administered intravenously to 2week-old GSD-Ia mice (1013 vector particles/kg body weight). Survival was prolonged to >5 months following vector administration, in contrast to untreated GSD-Ia mice that survived for <3 weeks. Although GSD-Ia mice were initially growth-retarded, treated mice increased 4-fold in weight to normal size. Hypoglycemia during fasting was completely corrected by 2 weeks following treatment, which surpassed the beneﬁt of previous AAV vectors. Hyperlipemia was normalized. Importantly, the number of vector particles administered was reduced >100-fold without
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
compromising survival or biochemical correction of treated mice. Finally, the AAV vector completely corrected hypoglycemia during fasting and normalized growth in three GSD-Ia dogs, which surpasses all previous gene therapy results in the canine model for GSD-Ia. These early preclinical data have demonstrated eﬃcacy and feasibility that could justify a clinical trial of AAV vector-mediated gene therapy in GSD-Ia.
37. Plasma branched-chain amino acid concentrations are decreased by sodium phenylbutyrate with no change in their appearance rate or protein turnover as measured by stable isotope tracers. B.C. Lanphera, J. Marinic, F. Scagliaa, S. Cartera, P.J. Garlickc, F. Jahoora,d, B. Leea,b. aDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; bHoward Hughes Medical Institute, Chevy Chase, MD 20815, USA; cDepartment of Animal Sciences, University of Illinois Urbana-Champagne, Urbana, IL 61801, USA; dChildren’s Nutritional Research Center, Houston, TX 77030, USA. Objective: We have observed that patients taking sodium phenylbutyrate as therapy for urea cycle disorders have a clinically signiﬁcant decrease in circulating levels of branched chain amino acids. In this study, we attempt to further understand this eﬀect with multiple stable isotope tracers. Methods: Seven healthy controls were studied using a multiple primed-constant infusion of stable-isotope tracers at baseline and after 2 days of sodium phenylbutyrate treatment (10 mg/m2/d). In each case, after 2 days of dietary stabilization (0.6 g protein/kg/day), infusions were conducted over 10 h. Blood, urine, and breath samples were collected just prior to and during the infusions. Results: Urea synthesis decreased by 24 ± 7 lmol/kg/h (p < 0.05) in treated subjects, while glutamine ﬂux increased by 40 ± 9 lmol/kg/h (p < 0.05). Also, BCAA levels decreased signiﬁcantly in subjects on phenylbutyrate. Fasting leucine levels dropped from 106 ± 33 to 64 ± 18 lmol/L (p < 0.01). Isoleucine dropped from 54 ± 9 to 33 ± 10 lmol/L (p < 0.01). Valine dropped from 204 ± 24 to 139 ± 32 lmol/L (p < 0.01). There were no signiﬁcant changes in the concentration of other amino acids, including threonine, serine, methionine, phenylalanine, and lysine. There was no demonstrable change in the appearance rate of leucine (104.9 ± 4 lmol/kg/h at baseline, 110.0 ± 21 lmol/kg/h on treatment, p = 0.53). There was also no change in whole-body protein oxidation as measured by the appearance of labeled carbon dioxide from 13C1-leucine in expired breath of participants (p = 0.27). Conclusions: At this level of protein intake in control subjects, sodium phenybutyrate achieves its desired eﬀect on urea synthesis, while the decrease in BCAA does not appear to adversely aﬀect total body protein catabolism. An important question will be whether this will similarly hold patients with inborn errors of metabolism who may have less capacity for adaptation to a nitrogen load.
38. Evidence of dysregulated insulin secretion in mice with global knockout of short-chain 3-hydroxy acyl-CoA dehydrogenase. C. Lia, P. Chena, S.B. Narayana, W. Qinb, J. Chena, F.M. Matschinskyb, A.W. Straussc, M.J. Bennetta, C.A. Stanleya. aThe Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA; bSchool of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; cVanderbilt Children’s Hospital and Vanderbilt University Medical Center, Nashville, TN 37232, USA. Congenital hyperinsulinism (HI) is the most common cause of hypoglycemia in infants and children. A newly discovered genetic form of HI is associated with recessive inactivating mutations of the mitochondrial fatty acid b-oxidation enzyme, short-chain L-3-hydroxy fatty acyl-CoA dehydrogenase (SCHAD). To explore the mechanism of this unusual fatty acid oxidation defect, we have begun studies of insulin secretion in SCHAD knockout mice. Pancreatic islets were isolated by collagenase digestion and cultured in 10 mM glucose for 3 days. Insulin secretion was studied by islet perifusion; cytosolic calcium responses were measured by dual-wave length ﬂuorescence microscopy. In vivo, SCHAD)/) mice had mild hypoglycemia compared to +/+ controls (98 ± 4 mg/dL vs.
136 ± 6 mg/dL, p < 0.001, n = 12). Similar to children with SCHAD deﬁciency, )/) mice had increased plasma levels of 3-OH-butyrylcarnitine (0.61 ± 0.08 vs. 0.16 ± 0.02 lmol/L, p < 0.01, n = 3). In perifusion studies using ramp stimulation with glucose (0–25 mM in 50 min), isolated SCHAD)/) islets had a slightly lower glucose threshold (6 mM vs. 8 mM), but similar maximum insulin secretion compared to +/+ control islets. Addition of 1 mM octanoate further lowered the threshold for glucose stimulation in SCHAD)/) islets to 3.5 mM, but had no eﬀect in +/+ islets. SCHAD)/) islets had normal basal cytosolic Ca2+; however, stimulation with glucose produced an earlier rise in cytosolic calcium in )/) islets compared to +/+ islets. These studies indicate that SCHAD-/- islets display abnormalities in regulation of insulin secretion consistent with the reports of hyperinsulinism in children with SCHAD deﬁciency. The results suggest that SCHAD deﬁciency causes increased sensitivity to glucose stimulated insulin release; this abnormality in insulin regulation is enhanced in the presence of a medium chain fatty acid substrate for the enzyme. Further studies to identify the mechanism of islet dysregulation in SCHAD)/) islets are in progress.
39. A new prospective multicenter study of treatment and outcome in urea cycle disorders (UCDs). Uta Lichter-Konecki and the Members of the UCD-Consortium. Children’s National Medical Center (CNMC), Washington, DC, USA. Objective: To conduct a longitudinal multidisciplinary investigation of the natural history, morbidity, current state of the art treatment, and mortality in people with urea cycle disorders (UCDs). Research questions regard the prevalence of morbid indicators of disease severity, correlations between various biomarkers and disease severity and progression, and the safety and eﬃcacy of currently used and new UCD therapies. Methods: This study is conducted at CNMC and 7 collaborating centers (Baylor College of Medicine, UCLA, Children’s Hospital of Philadelphia, Vanderbilt University, Yale University, Mt. Sinai School of Medicine, University Hospitals of Cleveland). The RDCRC established a contact registry and launched a longitudinal study at all 8 sites to determine the natural history of UCDs. It also approved a study to determine the eﬀect of sodium phenylbutyrate (Buphenyl) treatment on markers of morbidity in argininosuccinic aciduria (ASA). Additional components are (i) studies: a clinical trial of an investigational new drug, N-carbamyl-L -glutamate, for treatment of these disorders; a demonstration project for measuring in vivo ureagenesis in UCD using 13C acetate that will be important for classiﬁcation of patients and for evaluation of treatment eﬃcacy; a neuroimaging study to assess neural mechanisms of Injury in Inborn Errors of Urea Metabolism; an incidence, prevalence, and case fatality study, a pilot study regarding cytokines as biomarkers of metabolic crisis in individuals with urea cycle defects; a study about the safety and eﬃcacy of hypothermia treatment in hyperammonemic encephalopathy; a study of the role of nitric oxide in ASA and a study regarding DNA polymorphisms in urea cycle disorders (ii) training of graduate students, pediatric residents, clinical fellows and junior faculty members in the ﬁeld of inborn errors of metabolism; and (iii) development and maintenance of a UCD website. This initiative is undertaken in close collaboration with the National Urea Cycle Disorders Foundation (NUCDF), the leading public advocacy organization for these diseases. Results: Two hundred and twelve individuals are registered in the UCD contact registry to date. Seventy-eight subjects have been enrolled in the Longitudinal Study with a baseline evaluation. Subjects include patients of SIMD physicians, those that have contacted us through the contact registry and at the NUCDF annual meeting, and those identiﬁed through NUCDF recruitment eﬀorts and collaborations with metabolic centers around the country. Funded by a NIH Rare Diseases Clinical Research Center Grant (5U54RR019453), the Kettering Foundation, and the O’Malley Family Foundation. 40. Treating a patient with severe early-onset, non-dysmorphic carnitine palmitoyltransferase II (CPTII) deﬁciency. Janet Isaacs, Uta LichterKonecki. Children’s National Medical Center (CNMC), Washington, DC, USA.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 Objective: To device a dietary therapy for a child with severe earlyonset, non-dysmorphic CPTII deﬁciency whose two older siblings had succumbed to the disease in the ﬁrst 5 weeks of life. Methods: To provide the minimum amount of essential fatty acids required for age, the diet was composed of a formula very low in long-chain fats (tolerex powder, water and MCT oil) and oral walnut oil. Tolerex was selected because it was the lowest in fat and previously used in similar conditions. High energy was achieved from high carbohydrates and medium chain triglycerides. Total fats were slowly elevated from 4% of total calories to 45% of total calories, with 6% total calories from long-chain fats and the remainder of the lipids from medium-chain triglycerides. Oral walnut oil was used as a supplemental source of linoleic acid (LA) and alpha-linolenic acid (ALA) to provide 500 mg/100 cal LA and 50 mg/100 cal ALA in infancy, and increased over time with growth. Results: The patient was born at 39 weeks gestation. The pregnancy was complicated by ultrasonographic (US) evidence for cardiomegaly and hepatosplenomegaly at 37 weeks gestation. Because of the US ﬁndings and prior death of two siblings, the child was transferred to our NICU on the ﬁrst day of life for observation. He went into severe metabolic crisis with an ammonia level >1200 lmol/l, when lipid intake (soybean oil emulsion) reached 2 g/kg. Diagnosis was conﬁrmed by tandem mass spectrometry (David Millington), ﬁbroblast assay (Michael Bennett), and molecular genetics (Georgirene D. Vladutiu). Hemodialysis, high carbohydrate and low fat intake (0.5 g/kg/day) rescued the child and dietary management was initiated. The combination of Tolerex, walnut oil and MCT oil used, allowed maintaining essential fatty acids within the normal range and normal growth but weight and head circumference remained below the third percentile. Developmentally, he started walking at 14 months of age and at 16 months of age he walked stably, spoke 2 words, could feed himself, and used a pincer grasp. Conclusion: The combination of Tolerex, MCT oil and walnut oil we employed may allow to raise a child with severe early-onset, nondysmorphic CPTII deﬁciency. We were concerned about his head circumference which remained below the third percentile but he reached developmental milestones in time. Supplementation with preformed arachidonic acids and DHA was considered. He succumbed to severe, acute cardiomyopathy in a metabolic crisis following an RSV infection. 41. Glycosylation aﬀects membrane maturation of the OCTN2 carnitine transporter. N. Longo, C. Amat di San Filippo. Division of Medical Genetics, Departments of Pediatrics and Pathology, University of Utah, Salt Lake City, UT 84132, USA. Objective: Primary carnitine deﬁciency is a disorder of fatty acid oxidation caused by mutations in the Na+-dependent carnitine/organic cation transporter OCTN2. Most missense mutations identiﬁed in patients with primary carnitine deﬁciency aﬀect predicted transmembrane domains or intracellular loops of the transporter. Exceptions are P46S and R83L, located in an extracellular loop close to putative glycosylation sites (N57, N64, and N91) of OCTN2. Analysis by confocal microscopy indicated that P46S and R83L impaired maturation of the transporter to the plasma membrane. We tested whether glycosylation of OCTN2 was required for maturation to the plasma membrane. Methods: The three putative glycosylation sites (N57, N64, and N91) of OCTN2 were substituted using site-directed mutagenesis by glutamine (Q) and their eﬀect on carnitine transport and subcellular localization was determined by kinetic analysis and confocal microscopy. Results: Substitution of the three putative glycosylation sites with glutamine (Q) decreased mildly carnitine transport when single sites were substituted. By contrast, simultaneous substitution of N57 and N64 caused a marked decline in carnitine transport that was fully abolished when all three glycosylation sites were substituted by glutamine (N57Q/N64Q/N91Q). Analysis by confocal microscopy indicated that glutamine substitutions caused progressive retention of OCTN2 transporters in the cytoplasm, up to full retention (such as that observed with R83L) when all three glycosylation sites were substituted. Correlation between carnitine transport and number of transporters on the plasma membrane indicated a signiﬁcant, but not perfect relationship. Kinetic analysis indicated that the substitution of glycosylation sites also aﬀected the aﬃnity of the transporter toward
carnitine. Therefore, substitution of glycosylation sites aﬀects both maturation of OCTN2 transporters to the plasma membrane and substrate recognition. Conclusions: These results indicate that glycosylation is essential for the maturation of OCTN2 carnitine transporters to the plasma membrane and suggest that P46S and R83L cause primary carnitine deﬁciency by impairing OCTN2 glycosylation.
42. Physician reported outcomes of enzyme replacement therapy in older, severely aﬀected patients with Pompe disease. A.T. Van der Ploega, D.L. Marsdenb. aDivision of Metabolic Diseases and Genetics, Erasmus MC-Sophia, 3015 GJ Rotterdam, The Netherlands; bGenzyme Corporation, Cambridge, MA 02142, USA. Subjective: Pompe disease, due to a deﬁciency in lysosomal acid aglucosidase, results in progressive skeletal muscle weakness and respiratory insuﬃciency leading to substantially decreased quality of life and often early death. Clinical trials in severely aﬀected infants showed that ERT was safe and eﬀective. There is currently limited outcomes data in older patients. We reviewed the physician reported outcomes of severely aﬀected juvenile and adult patients who were treated with recombinant human acid a-glucosidase (ERT). Methods: Physician narrative reports describing outcomes for 18 juvenile and adult patients with severe Pompe disease who were enrolled in an extension phase of an early clinical trial (3) or a compassionate use program (15) because they did not meet inclusion criteria for a currently ongoing clinical trial, were reviewed. Mean age at ERT initiation was 30.8 ± 14.3 years (N = 18); treatment duration ranged from 8 to 75.6 months. At baseline, all patients were wheelchair bound. Seventeen patients required respiratory assistance by invasive (N = 9), non-invasive (N = 7), a combination of invasive and non-invasive (N = 1) ventilation. They received a starting dose of 10 mg/kg weekly or 20 mg/kg bi-weekly ERT infusions. Results: Most patients showed signs and symptoms of advanced stage Pompe disease prior to ERT. Ten patients demonstrated improvements in respiratory function, including a 50% reduction in required ventilation for one patient. Motor function improved for 13 of 18 patients, and stabilized in the remaining 5 patients; no declines in muscle strength or tone were noted. Almost all (15/16) patients reported positive improvements in their quality of life since commencing ERT. Treatment was well-tolerated, with only one report of a transient infusion-associated reaction (chills) during the ﬁrst infusions. Conclusions: Enzyme replacement therapy for juvenile and adult patients with severe Pompe disease is associated with gains in both respiratory and motor function. Intervention earlier in the disease course was associated with greater improvement in clinical parameters. Overall, patients were satisﬁed with their treatment, and reported positive improvements in their quality of life regardless of the magnitude of clinical gains or baseline disease involvement. For rare diseases, all forms of clinical information, including physician reported outcomes, can provide meaningful outcomes data.
43. Response to treatment with Myozyme in juvenile patients with Pompe disease. A.T. Van der Ploega, D.L. Marsdenb. aDivision of Metabolic Diseases and Genetics, Erasmus MC-Sophia, 3015 GJ Rotterdam, The Netherlands; bGenzyme Corporation, Cambridge, MA 02142, USA. Subjective: Pompe disease, due to a deﬁciency in acid-a glucosidase, which causes intralysosmal storage of glycogen, can present from soon after birth with severe, rapidly progressive cardio-respiratory failure and death, usually by 1 year of age. Older patients can present at any time after age 1 with a progressive neuromuscular disease, usually with little or no cardiac involvement, leading to death from respiratory failure. A subset of patients aged 5–15 years at presentation may progress more rapidly than older patients. We present preliminary clinical trial data for 74 weeks of enzyme replacement therapy with Myozyme (alglucosidase alfa, rhGAA) in 5 patients, aged 5–15 years. Methods: Prospective, open-label, single arm, single-centre study (Rotterdam). All patients were freely ambulatory and ventilator-free except one patient who required nocturnal ventilation with BiPAP. Age at treatment-onset was median 12 years with range 5–15 years. All were treated with Myozyme 20 mg/kg intravenously every 2
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
weeks for 74 weeks. Assessments were for respiratory function by measured Forced Vital Capacity (FVC) in sitting position, FVC in supine position; for muscle strength by Manual Muscle Testing (MMT) and Hand Held Dynamometry; for muscle function by 6-Minute Walk Test (MWT) at comfortable and fast speed timed tests; for safety evaluation by reported adverse events, infusion-associated reactions, and anti-rhGAA IgG antibody titers. Results: Preliminary results show that 2 patients had normal FVC at baseline and remained stable; 3 patients had reduced FVC at baseline which progressively improved; all patients had improved muscle strength compared to baseline (MMT, combined hip and shoulder scores) and improved endurance (6MWT). Treatment was well-tolerated by all patients. No infusion-associated reactions were reported. 5/5 patients developed anti-rhGAA IgG antibody titers during ﬁrst 38 weeks. Titers ranged from 1/100–1/6400. No in vitro inhibitory antibody activity was found. Conclusion: Preliminary data in 5 patients with later onset Pompe disease (aged 5–15 years) indicate that treatment with Myozyme 20 mg/kg every other week leads to improvements in respiratory function and motor function after 74 weeks (38 infusions) of treatment, without any evidence of progression of neuromuscular symptoms. Treatment was well-tolerated by all patients. 44. Domino liver transplant in a patient with intermediate maple syrup urine disease. M.M. Martina, K. Weisigera, C. Zlatunicha, W. Packmanb, I. Mehtaa, T. Cowanc, J. Robertsd, N. Basse, S. Packmana.. a Department of Pediatrics, University of California, San Francisco, USA; bPaciﬁc Graduate School of Psychology; cDepartment of Pathology, Stanford University; dDepartment of Surgery, University of California, San Francisco; eDepartment of Medicine, University of California, San Francisco. Maple syrup urine disease (MSUD) is an autosomal recessive disorder caused by decreased activity of branched-chain a-ketoacid dehydrogenase (primarily expressed in muscle and liver), leading to the accumulation of branched chain amino acids (BCAA) and corresponding a-ketoacids (BCKA). Treatment consists of a low BCAA diet, thiamine for those who prove responsive, and management of acute metabolic episodes, for which patients are continuously at risk. It has been believed that patients under good dietary and biochemical control could be expected to have a good neurological prognosis, with liver transplant reserved for those with severe liver disease. However, recent reports suggest that patients with classic MSUD may in fact have mild-to-moderate neurocognitive dysfunction despite adequate control. In this setting, we report the second patient with MSUD, and the ﬁrst with intermediate type, to undergo domino liver transplant. The patient is 27 y o male diagnosed with intermediate MSUD at age 10 mos, after presenting in a ketoacidotic coma. He was maintained on a diet low in BCAAs, with plasma leucine levels between 300 and 600 l, when he was well. DNA analysis revealed two mutations in the E1a gene: a missense mutation in exon 9 and a single nucleotide insertion in exon 2. In vivo oxidation analysis showed him to be thiamine non-responsive. Over the years, he had numerous hospitalizations for mild-to-severe metabolic decompensation, and white matter changes were seen on brain MRI. At age 26 y, he requested evaluation for liver transplant, due to chronic fatigue and diﬃculty concentrating. Pre-transplant testing revealed that his cognitive functioning is approximately 1 SD < mean. In psychosocial functioning, he reported minimal diﬃculty in daily living skills; however, his level of distress was elevated (i.e., he endorsed feelings of inadequacy, anxiety, depression, and social alienation). He received a cadaveric liver transplant and his native liver was donated to another patient. Two mos post-transplant, he remains stable on an unrestricted diet, with normal BCAA levels, allo-isoleucine <12 lM, and trace BCKA elevations. Reports from the patient and parent indicate improved energy and concentration. The domino recipient is a 58 y o female with end-stage liver disease (alcoholic cirrhosis). Prior to transplant there were no elevation in the BCAA, and allo-isoleucine was absent. These chemistries remained normal post-transplant. There have now been several cases of non-exigent liver transplant in patients with classic MSUD, in an attempt to minimize or eliminate longterm neurological deﬁcits. In the present case, patient and parental reports
indicate that our patient has experienced improvement in his neurocognitive functioning. Formal post-transplant psychosocial and cognitive testing will be performed once his clinical course stabilizes. Biochemical studies post-transplant show no plasma BCAA elevations on an unrestricted diet. Accordingly, liver transplant may well decrease his risk of metabolic intoxication, and improve his quality of life. This transplant was performed for a disease under good metabolic control, but in which long term neurodevelopmental defects are only now becoming recognized. However, since the natural history of the disease and the actual long term beneﬁts of transplant remain unknown, the potential risks and beneﬁts of liver transplant should be carefully weighed in all such patients. 45. Quantitative method for the determination of carnitine and acylcarnitines in biological matrices by high performance liquid chromatography/mass spectrometry. Paul E. Minklera, Maria S.K. Stolla, Stephen T. Ingallsa, Shuming Yanga, Janos Kernerc, Charles L. Hoppela,b. aDepartment of Pharmacology, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; bDepartment of Medicine, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA; c Department of Nutrition, Case Western Reserve University School of Medicine, Cleveland, OH 44106, USA. Objective: A method for the quantitative measurement of carnitine and speciﬁc acylcarnitines in urine, plasma, skeletal muscle, and bloodspots by HPLC/MS is presented. For acylcarnitines, this procedure chromatographically resolves and therefore distinguishes among acylcarnitine constitutional isomers (e.g. octanoyl- from valproyl-), and it also distinguishes acylcarnitines from isobaric contaminants. Therefore, false positives from isobaric contaminants are eliminated. Methods: Carnitine and acylcarnitines were isolated from biological matrices by silica gel cation-exchange solid phase extraction, derivatized with pentaﬂuorophenacyl triﬂuoromethanesulfonate, chromatographed by sequential ionexchange/reversed-phase HPLC, and detected by electrospray ionizationmass spectrometry using a quadrupole ion trap instrument. Carnitine was detected by MS/MS selected reaction monitoring. Acylcarnitines were detected using full scan MS/MS spectra. Multiple-point standard curves were generated for carnitine (with d3-carnitine as the internal standard). Acylcarnitine standards were synthesized, and multiple-point standard curves were generated for 42 acylcarnitines: acetyl-, propionyl-, butyryl-, isobutyryl-, valeryl-, isovaleryl-, 3-hydroxy-isovaleryl-, 2-methyl-butyryl-, tigloyl-, 3-methyl-crotonyl-, hexanoyl-, 4-methyl-valeryl-, phenylacetyl-, phenylpropionyl-, 4-phenyl-butyryl-, benzoyl-, 4-methyl-hexanoyl-, octanoyl-, valproyl-, cis-3,4-methylene-heptanoyl-, 4-methyl-octanoyl-, decanoyl-, cis-4-decenoyl-, cis-3,4-methylene-nonanoyl-, 5-decynoyl-, lauroyl-, trans-2-dodecenoyl-, myristoyl-, trans-2-tetradecenoyl-, palmitoyl-, palmitoleoyl-, trans-2-hexadecenoyl-, stearoyl-, oleoyl-, linoleoyl-, succinyl-, methyl-malonyl-, ethyl-malonyl-, glutaroyl-, adipoyl-, 3-methyl-glutaroyl-, suberoyl-, and sebacoylcarnitine (internal standards used were d6-acetyl-, d3-propionyl-, undecanoyl-, undecanedioyl-, and heptadecanoylcarnitine). Results: Method validation studies were performed demonstrating the accuracy, precision, and reproducibility of the method. Examples of urine, plasma, skeletal muscle, and bloodspot carnitine and acylcarnitine quantiﬁcation using this procedure are shown. Conclusions: This procedure was applied to diﬀerent biological matrices leading to unambiguous identiﬁcation and accurate quantiﬁcation of carnitine and acylcarnitines in specimens of interest for research and diagnostic purposes. 46. Characterization of mutations in human N-acetylglutamate synthase using bioinformatic and crystallographic approaches. H. Morizono, L. Caldovic, D. Shi, M. Tuchman. Children’s National Medical Center, Washington, DC 20010, USA. Objective: N-Acetylglutamate synthase (NAGS) deﬁciency, an autosomal recessive disorder, is the last urea cycle disorder for which molecular testing became available. In order to better understand how mutations may result in functional deﬁcits of NAGS, we mapped the mutations onto a homology model of the enzyme based on shared similarity to Nacetylglutamate kinase (NAGK), and to proteins that have a GNAT
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 (GCN5-related N-acetyltransferase) fold. A still better model would be an X-ray crystallographic structure of the enzyme, however, vertebrate NAGS appears to readily denature, but we identiﬁed a closely related bacterial homolog from Xanthomonas campestris that was more stable and have used it for crystallization studies. Methods: Mutations were identiﬁed in patients by sequencing samples provided to us, or by a literature search for NAGS deﬁciency. Hidden Markov Model proﬁles were created for NAGK and for GNAT proteins whose structures were available and the human NAGS amino acid sequence was aligned to the proﬁles. These alignments were used for building homology models with MODELLER. The X. campestris NAGS has been expressed and puriﬁed as a selenomethionine derivative and crystallized. Crystals were analyzed at the Advanced Photon Source, and preliminary diﬀraction data has been collected. Results: To date, 21 mutations and three polymorphisms have been identiﬁed in the NAGS gene. The deleterious eﬀects of eight mutations were conﬁrmed in expression studies. Mutations on the NAGS gene are distributed throughout the gene. No mutations have been found in the putative mitochondrial targeting signal or the variable segment of NAGS that is encoded by exon 1. The homology model is in two parts, corresponding to the acetylglutamate kinase domain and the GNAT domain. Mutations aﬀecting the Km of NAGS for glutamate are found near the predicted glutamate-binding site. Mutations aﬀecting the arginine response appear to surround the predicted arginine-binding site. Model building using the X. campestris NAGS electron density maps has been complicated by the numerous breaks in the density, but two distinct domains are visible that appear to be the NAGK and GNAT domains. Docking of the two parts of the homology model into the density map is in progress. Conclusions: The homology model of NAGS appears to reasonably describe the structural and functional basis for several mutations, and may be improved by providing additional spatial restrains using the available low resolution density maps. 47. Role of arginine and protein-protein interactions in regulation of the urea cycle. Ljubica Caldovic, Nantaporn Haskins, Himani Majumdar, Qiuhao Qu, Hiroki Morizono, Mendel Tuchman. Children’s Research Institute, Children’s National Medical Center, The George Washington University, Washington, DC, USA. N-Acetylglutamate (NAG) is an essential allosteric activator of carbamylphosphate synthetase I (CPSI), the ﬁrst and rate limiting enzyme of the urea cycle. Formation of NAG is catalyzed by N-acetylglutamate synthase (NAGS; EC 126.96.36.199). In the presence of arginine, the enzymatic activity of mammalian NAGS increases, while it inibits the activity of the homologous microbial enzymes. We examined the evolution of the arginine–NAGS interaction to gain a better understanding of the role arginine may play in regulation of the urea cycle. We also examined if the three mitochondrial enzymes of the urea cycle, NAGS, CPSI and ornithine transcarbamylase (OTC), form a multiprotein complex; this could explain channeling of the urea cycle substrates that was inferred by other researchers and the high eﬃciency of the urea cycle in converting ammonia to urea. We used co-immunoprecipitation and Western blotting to show that NAGS, CPSI and OTC interact in vivo and are currently examining if the interaction between NAGS and CPSI alters the biochemical properties of both enzymes, such as the response to arginine of NAGS and the aﬃnities for substrates of either enzymes. To better understand the role of arginine in the function of NAGS, we cloned ﬁsh NAGS genes and examined the arginine response of the corresponding proteins. Enzymatic activity of ﬁsh NAGS is partially inhibited by arginine; This suggests that the eﬀect of arginine on NAGS activity changed from inhibition to activation along with the change of CPSIII to CPSI as animals moved from the sea to land. Based on the similarity between mammalian NAGS and bacterial N-acetylglutamate kinases (NAGK) with known threedimensional structures we identiﬁed candidate residues that interact with arginine in mouse NAGS and engineered amino acid substitutions of these residues: F121C, E354A, G360P and G362S. The E354A and G362S substitutions completely abolish the activation of mouse NAGS by arginine, while the G360P and F121C mutant proteins are only partially
activated by arginine. These results provide functional identiﬁcation of arginine-binding amino acids and indicate that they are conserved across species in spite of the disparate arginine eﬀect on NAGS across species. 48. Silver-Russell syndrome, UPD 7 and mitochondrial dysfunction. Sumit Parikha, Michelle Puchowiczb, Charles Hoppelb, Bruce Cohena. a Center for Pediatric Neurology, Cleveland Clinic Neurosciences Institute, Cleveland, OH, USA; bCenter for Inherited Diseases of Metabolism, Case School of Medicine, Cleveland, OH, USA. Introduction: Silver-Russell syndrome (SRS, OMIM 180860) is a disorder that predominantly aﬀects somatic growth. The diagnosis is made clinically using a predeﬁned set of parameters. Approximately 10% of individuals with the clinical phenotype of SRS have maternal disomy of chromosome 7 (K. Hannula, 2002). In the past, metabolic derangements have been noted in children with SRS including hypoglycemia, lactic acidosis, basal ganglia abnormalities, and renal tubular acidosis. (A.L. Cazgan, 1994; R. Alvarenga, 1995; P.J. Willems, 1988) Results: We are reporting the ﬁrst Silver-Russell patient with both maternal disomy of chromosome 7 and mitochondrial dysfunction. This patient had abnormal accumulation of tricarboxylic acid cycle intermediates in urine, elevated C14:1 and long-chain acylcarnitines in plasma, renal tubular acidosis, and aminoaciduria. Polarographic study of freshly isolated skeletal muscle mitochondria (SMM) demonstrated a greater than 2 standard deviation (SD) reduction in ADP-stimulated state-3 oxidation of TMPD + ascorbate (complex IV) and complex I, II, and III substrates. Oxidation of fatty acid oxidation substrates palmitoyl-lcarnitine + malate, octanoate + malate, and acetyl-l-carnitine + malate were also reduced more than 2 SD’s. Spectrophotometric electron transport chain analysis of fresh SMM, fresh intact skeletal muscle and skin ﬁbroblasts was normal. Mitochondrial DNA point mutation and Southern blot analysis in blood and Complex 4 nuclear mutation testing in muscle (SCO1, SCO2, and SURF1) was negative. Skin ﬁbroblast PDC testing was normal. Skin ﬁbroblast lactate and pyruvate levels are normal. Conclusions: We suspect the mitochondrial dysfunction is likely secondary in SRS, due to the primary genetic defect. Since the genes involved in SRS are not known, and the vast majority of nuclear gene defects in primary mitochondrial disease have not been identiﬁed, this ﬁnding can not be proven. Due to the previously reported metabolic abnormalities in SRS patients, as cited above, and the ﬁndings in our patient, it may be worthwhile sending metabolic screening on individuals with a SRS phenotype. Our patient has made signiﬁcant subjective developmental progress (parental and physician observation) once starting a low fat diet, l-carnitine, coenzyme Q10, sodium citrate and riboﬂavin. Treatment of metabolic and mitochondrial abnormalities in SRS patients may improve growth and development. 49. Analysis and separation of plasma glutarylcarnitine by UPLC-MS/MS. A. Liua, R. Guymonb, D.M. Johnsonc, M. Pasqualia,b,d. aARUP Institute for Clinical and Experimental Pathology, Salt Lake City, UT 84108, USA; bARUP Laboratories, Salt Lake City, UT 84108, USA; c Department of Chemical Pathology, Women’s and Children’s Hospital, North Adelaide, Australia; dDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, UT 84108, USA. Objective: The diagnosis of glutaric acidemia type I (GA-1, glutarylCoA dehydrogenase deﬁciency) relies on increased excretion of glutaric and 3-hydroxyglutaric acids in urine and increased glutarylcarnitine in plasma and urine. Reliable methods for the quantitation of glutarylcarnitine are critical for screening and diagnosis of GA-1, since aﬀected patients have variable elevations of the characteristic metabolites. Tandem mass spectrometry (MS/MS) identiﬁes acylcarnitine species based on their m/z (mass/charge) ratio and cannot separate isomers or other species with the same m/z ratio. Glutarylcarnitine (C5-DC), methylsuccinylcarnitine, hydroxydecanoylcarnitine (C10-OH) all produce a 388/85 ion transition by MS/MS parent ion scan. We have developed a quantitative method for the separation of glutarylcarnitine from other species and quantitation by stable isotope dilution and UPLC-MS/MS. Methods: We analyzed plasma
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
specimens collected from normal controls, patients with GA-1, and patients receiving carnitine and other dietary supplements, with MS/MS alone and with UPLC-MS/MS. Plasma samples were extracted using acidiﬁed acetonitrile (formic acid 0.3%) and analyzed using UPLC-MS/ MS (Waters Quattro Premier with Acquity UPLCTM using Acquity UPLCTM BEH C18 column, 2.1 · 50 mm, 1.7 mm pore size). Glutarylcarnitine was monitored in MRM mode, using d3-glutarylcarnitine as internal standard. Results: Analysis of acylcarnitines by MS/MS resulted in three group of patients: (a) patients with GA-1 and elevated glutarylcarnitine (plus other species); (b) normal controls with concentrations of glutarylcarnitine (plus other species) in the normal range; (c) patients who did not have GA-1 with elevated glutarylcarnitine (plus other species). Using UPLC-MS/MS, glutarylcarnitine was chromatographically well separated from methylsuccinylcarnitine, C10–OH-carnitine, and 6 other species, all producing 388/85 ion transitions and therefore interfering with the quantitation of glutarylcarnitine by MS/MS. Interestingly, these other species were particularly elevated in patients receiving carnitine and other dietary supplements suggesting that they could be of dietary origin. Conclusions: UPLC-MS/MS can distinguish glutarylcarnitine from other species with the same m/z (mass/charge) ratio. This method could be used as a second tier test to conﬁrm elevated glutarylcarnitine levels in newborn screening, plasma or urine samples of patients with suspected GA-1. 50. Sterol precursors accumulate in detergent-resistant membranes in SLOS and CDPX2 patients. Dinesh Rakhejaa,b, Richard L. Boriacka, Srinivas B. Narayanc. aDepartment of Pathology, Children’s Medical Center, Dallas, TX, USA; b Department of Pathology, University of Texas Southwestern Medical Center, Dallas, TX, USA; cDepartment of Pathology and Laboratory Medicine, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA. Disruption of post-squalene cholesterol biosynthesis leads to systemic fetal dysmorphogenesis, now believed to be caused by interruption of the hedgehog signaling pathway. In this study, we demonstrate the accumulation of cholesterol precursors in detergentresistant membranes prepared from liver tissues of two severely aﬀected infants with cholesterol biosynthetic disorders. 8-dehydrocholesterol and 7-dehydrocholesterol were identiﬁed in the detergentresistant membranes of an infant with severe Smith–Lemli–Opitz Syndrome (SLOS); and cholest-8(9)-ene-3b-ol was identiﬁed in the detergent-resistant membranes of an infant with severe X-linked dominant chondrodysplasia punctata (CDPX2) (Table 1). Interestingly, the absolute amounts of cholesterol were not decreased in whole liver homogenate and detergent-resistant membranes of the latter infant, raising the question whether cholesterol deﬁciency or sterol precursor accumulations are the cause for the lethal malformations. The role of altered lipid raft environment in cholesterol biosynthetic disorders should be studied to further understand the pathophysiology of these disorders of fetal dysmorphogenesis. Table 1 Sterols, expressed as lg per lg protein, detected by gas chromatography/ mass spectrometry
Cholesterol Desmosterol 8-Dehydrocholesterol 7-Dehydrocholesterol Cholest-8(9)ene-3b-ol Lathosterol
Sterols in whole liver homogenate
Sterols in detergentresistant membranes
Controls SLOS CDPX2
Controls SLOS CDPX2
1.505 0.033 —
0.111 2.961 — — 0.444 0.002
0.712 — —
0.299 — 0.442
0.734 — —
51. Worldwide experience in newborn screening for medium-chain Acyl-CoA dehydrogenase deﬁciency (MCAD). William J. Rhead. Medical College of Wisconsin. As judged by tandem mass spectrometry blood spot screening, MCAD incidence is 1/14,600 (CI 95%: 1/13,500–1/15,900) in almost 8.2 million newborns worldwide and is 2- to 3-fold higher than that identiﬁed in the same populations after clinical presentation. In mass screened newborn populations, the 985 A>G (K329E) mutation accounts for 54–90% of disease alleles, with homozygotes representing about 47–80% of MCAD cases. Worldwide, octanoyl-(C8)-carnitine levels are an eﬀective primary screen for MCAD in newborns. Newborns homozygous for the 985 A>G mutation have higher octanoyl-(C8)-carnitine levels than do 985 A>G compound heterozygotes and other genotypes. Time of sampling after birth also signiﬁcantly aﬀects octanoyl-(C8)-carnitine levels in MCAD newborns. Tandem mass spectrometry newborn blood spot screening for MCAD is accurate, eﬀective, reduces morbidity and mortality and merits expansion to other populations worldwide. 52. Cardiomyopathy as the presenting feature in a 15-year-old boy with propionic acidemia. Amy White, William J. Rhead, Dieter Matern, Joseph Cava, Jan Kraus, Magdalena Ugarte. Children’s Hospital of Wisconsin, Mayo Clinic, University of Colorado, and Universidad Autonoma de Madrid. A 15-year-old boy was well and normally active until diagnosed with a cardiomyopathy. He was a competitive high school tennis player until shortly before diagnosis and had no symptoms of cardiac insuﬃciency. The family history was remarkable for a seven year-old sister who died of an idiopathic cardiomyopathy 20 years earlier. Mitochondrial vitamin and cofactor cocktail therapy did not improve his initial cardiac function, nor did high dose carnitine supplementation. He was not carnitine deﬁcient. He required donor cardiac transplant. During his pretransplant workup, an elevated propionyl-carnitine level was detected. Acyl-carnitine analysis in skin ﬁbroblasts revealed massively elevated propionyl-carnitine, similar to that seen in severe, neonatal propionic acidemia. Direct assay of propionyl-CoA carboxylase (PCC) revealed 4% residual activity. Mutation analysis demonstrated that he had G188R and N536D substitutions in PCC, resulting from c.562 G>A and c.1606 A>G mutations, respectively. These have been observed in other propionic acidemia patients and represent both severe and mild mutations. Since the transplant, he has been maintained on a normal diet with carnitine and biotin supplementation, as well as immunosuppressive medications. Acyl-carnitine analysis of his cardiac tissue is underway at Mayo Clinic. He is a very unique case of propionic acidemia with globally normal health and cardiovascular function before developing an acute cardiomyopathy. His younger sibling presumably had the same disorder, although we have no explanation for her presenting at a much earlier age. This is a rare, unusual and detectable form of metabolic cardiomyopathy that may be amenable to medical therapy if detected before irreversible cardiac damage has occurred. 53. Glutaric acidemia type I and the expanded newborn screening program: Recommendations for follow-up of abnormal screening results. G. Scharera, M. Woontnerb, E. Savinoa, E. Spectorc, S.I. Goodmanb. a Department of Pediatrics, Division of Clinical Genetics and Metabolism, UCDHSC, Denver, CO, USA; bDepartment of Pediatrics, University of Colorado School of Medicine, Denver, CO, USA; cDNA Diagnostics Laboratory, UCDHSC, Aurora, CO, USA. Glutaric acidemia type I (GA-I) is a rare metabolic disorder caused by mutations in the glutaryl CoA dehydrogenase (GCDH) gene; and is characterized chemically by urinary excretion of glutaric and 3-hydroxyglutaric acids, and clinically by disabling dystonia in childhood due to acute or chronic striatal necrosis. The abnormal organic aciduria is easily detected in some patients (high excretors), but in others organic aciduria is mild, intermittent, or absent. Genotype appears to predict the excretor phenotype, but not clinical severity. Treatment of patients before the onset of symptoms with carnitine, diet, and riboﬂavin prevents neurological disease in about two-thirds of aﬀected children, and presymptomatic
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 diagnosis in newborns is possible by demonstrating increased C-5 dicarboxylic carnitine ester in blood by tandem mass spectrometry (MS/ MS). Urine organic acid analysis and measurement of glutaric and 3hydroxyglutaric acids are indicated in all patients with even minimal increases of the C-5 dicarboxylic carnitine ester. Even if these studies are negative, babies with subtle or atypical features of GA-I should probably have the disease excluded by DNA analysis or enzyme assay on cultured ﬁbroblasts. Such features would include unexplained or progressive macrocephaly, movement disorder/mild dystonia, CNS or retinal hemorrhages, seizures, and radiologic evidence of fronto-temporal cortical atrophy, lesions in the caudate or putamen, or periventricular white matter changes. The hope-expectation-hypothesis is that GA-I infants likely to be missed by newborn screening are the low excretors that are diﬃcult to diagnose even after the appearance of symptoms, and that those detected by elevated blood glutarylcarnitine in newborn blood spots will be relatively simple to conﬁrm using this algorithm. Further, because some patients will not be detected by MS/MS, it is important that the diagnosis be considered in patients with appropriate clinical signs and symptoms, even if they had been screened for the condition as newborns. We believe that this algorithm will allow for maximal sensitivity/ speciﬁcity of newborn screening for this condition, and for comprehensive data collection to better assess the true prevalence of the disease and the risk of complications associated with various disease-causing mutations. 54. Cellular and tissue localization of globotriaosylceramide in Fabry disease. H. Askaria, C.R. Kaneskia, C. Semino-Morab, A. Angc, B. Wustmand, R. Schiﬀmanna. aDevelopmental and Metabolic Neurology Branco, NINDS, National Institutes of Health, Bethesda, MD, USA; bLaboratory of Gastrointestinal and Liver Studies, Uniformed Services University of the Health Sciences, Bethesda, MD, USA; cHistoRx, Inc., New Haven, CT, USA; dAmicus Therapeutics, Inc., Cranbury, NJ, USA. Objective: To describe cellular and subcellular localization of globotriaosylceramide in order to assess potential abnormal interactions of globotriaosylceramide leading to disease in Fabry patients. Methods: We used an anti-globotriaosylceramide monoclonal antibody (Seikagaku, Tokyo, Japan) for immunogold electron microscopy immunohistochemistry, and immunoﬂuorescence studies of tissues from patients on longterm enzyme replacement therapy (ERT) and normal controls. AntiLAMP1, anti-calreticulin, and DAPI were used in immunoﬂuorescence studies as markers of the lysosomes, ER, and nucleus, respectively. Toluidine blue, hematoxylin eosin, and Luxol fast blue staining were done as well. Results: Immunoreactivity for globotriaosylceramide was present in all organs examined: heart, kidney, brain, intestines, adrenal gland, aorta, skin, liver, and spleen. The cellular pattern and distribution of globotriaosylceramide varied between organs and cell types. In the brain, positive immunoreactivity was found only in the parahippocampal region. In all organs examined, globotriaosylceramide immunostaining was present in the cell membranes and cytoplasm of endothelial cells, even in the absence of lysosomal inclusions. Immunoﬂuorescence immunolabeling of heart and kidney tissues from a Fabry patient showed colocalization of globotriaosylceramide with lysosomal, ER, and nuclear markers. Immunogold electron microscopy conﬁrmed the presence of globotriaosylceramide in the cell membrane, lysosomes, ER, nuclear membrane and nucleus of vascular endothelial cells and ﬁbroblasts even in the absence of lysosomal inclusions. Cultured ﬁbroblasts from patients showed similar ﬁndings. Immunolabeling of organ tissues and cultured ﬁbroblasts from three unaﬀected controls was uniformly negative for globotriaosylceramide by immunohistochemistry and electron microscopy. Conclusions: A substantial amount globotriaosylceramide immunoreactivity remains in cells and tissues even after years of ERT in Fabry disease. For the ﬁrst time we demonstrate the presence of accumulated globotriaosylceramide in extralysosomal regions including in the cell membrane, ER and nucleus. These ﬁndings are crucial for the understanding of disease mechanism and suggest the use of immunostaining for
globotriaosylceramide as a means to assess response to novel speciﬁc therapies. 55. Pyruvate dehydrogenase complex deﬁciency due to abnormal stability of the E1b subunit. Zongchao Hana, Li Zhonga, Arun Srivastavaa,b,c, Peter W. Stacpoolec,d,e. aDepartments of Pediatrics (Division of Cellular and Molecular Therapy), University of Florida College of Medicine, Gainesville, FL 32610, USA; bDepartment of Molecular Genetics and Microbiology, University of Florida College of Medicine, Gainesville, FL 32610, USA; cThe General Clinical Research Center, University of Florida College of Medicine, Gainesville, FL 32610, USA; dDepartment of Medicine (Division of Endocrinology and Metabolism), University of Florida College of Medicine, Gainesville, FL 32610, USA; eDepartment of Biochemistry and Molecular, University of Florida College of Medicine, Gainesville, FL 32610, USA. We describe a new case of pyruvate dehydrogenase (PDH) complex (PDC) deﬁciency associated with the PDH E1b subunit (PDHB) gene. The patient was a 5-year-old girl with severe developmental delay, microcephaly, and agenesis of the corpus callosum. She had mild hyperlactatemia and moderately elevated lactate levels in her cerebrospinal ﬂuid. Her cultured skin ﬁbroblasts demonstrated a 55% reduction in PDC activity and markedly decreased immunoreactivity for PDHB protein, compared to healthy controls. The sequence of the total cDNA corresponding to the patient’s PHDA and PDHB genes revealed no pathological mutations. The relative expression level of PDHB mRNA and the rate of transcription and translation of the PDHB gene were normal. In contrast, PDC activity could be restored and the rate of degradation of the patient’s E1b protein decreased by the proteasome inhibitor MG132 and by Tyr23, a speciﬁc inhibitor of epidermal growth factor receptor–protein tyrosine kinase (EGFR-PTK). However, only Tyr 23 treatment restored E1b protein levels to those found in cells from healthy subjects or from patients with PDH E1a deﬁciency. We also found that the patient’s cells contained a high basal level of the tyrosine phosphorylated form of the EGFR, although the total EGFR protein level was similar to that found in cells from Ela deﬁcient patients and healthy subjects. These data indicate that PDC deﬁciency in this patient involves a post-translational modiﬁcation that may be due, in part, to increased turnover of the E1b protein following activation of EGFR-PTK by autophosphorylation at its tyrosine residues. This likely results in enhanced ubiquitination of the E1b protein, leading to proteasome-mediated degradation. Keywords: Pyruvate dehydrogenase deﬁciency; Mitochondria; Proteasome; EGFR-PTK; Ubiquitin. 56. Genetic mutation proﬁle of isovaleric acidemia patients in Thailand. P. Suwannarat, P. Kodcharin, N. Chongviriyaphan, Wattanasirichaigoon. Department of Pediatrics, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand. Objective: Isovaleric acidemia is an autosomal recessive disorder caused by deﬁciency of isovaleryl-CoA dehydrogenase. We describe the clinical presentation and course of two Thai patients and report the ﬁrst mutation analysis of the IVD gene in Thai patients. Methods: Patient 1 presented at three days of age with poor feeding, hypoglycemia and metabolic acidosis. Urine organic acids analysis revealed the presence of 3-OH-isovalerate and isovalerylglycine. Patient 2 had poor feeding and seizures at 10 days of age. Mild metabolic acidosis and ketosis resolved with intravenous ﬂuid resuscitation. He was referred due to a peculiar body odor at 17 days of age. Acylcarnitine analysis by MS/MS showed increased isovaleryl carnitine. Urine organic acid analysis showed 3-OH-isovalerate and isovalerylglycine. DNA analysis: genomic DNA was extracted by standard methods. Each exon of the IVD gene was PCR ampliﬁed and subjected to direct sequencing. Results: At 14 months of age, Patient 1 has two episodes of mild decompensation associated with acute gastroenteritis and has mild speech delay. He is homozygous for the Arg50Pro mutation. At 10 months of age, Patient 2 has normal growth and development and has had no
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
further episodes of decompensation. He is homozygous for the Gly120Arg mutation. Conclusions: We found two previously described mutations, however we did not ﬁnd the common Ala282Val which is associated with a mild phenotype. Long term follow-up will provide additional genotype– phenotype information. The majority of mutations in the IVD gene have been reported among Caucasians. Mutation analysis in other populations will provide additional information on the spectrum of mutations in this gene.
57. Second tier testing for the diﬀerential diagnosis of SCAD versus IBCD and IVA versus 2MBCD by UPLC-MS/MS of acylcarnitines. Sabrina Forni, Linda Alvarado, Xiaowei Fu, Lawrence Sweetman. Institute of Metabolic Disease, Baylor Research Institute, 3812 Elm Street, Dallas, TX 75226, USA. Second tier diagnostic tests based on the chromatographic separation of C4 and C5 acylcarnitine isomers can provide fast diﬀerential diagnosis of deﬁciencies of SCAD (Short-Chain Acyl-CoA Dehydrogenase) versus IBCD (Isobutyryl-CoA Dehydrogenase) and IVA (Isovaleric Aciduria) versus deﬁciency of 2MBCD (2-Methylbutyryl-CoA Dehydrogenase). Newborn screening and subsequent acylcarnitine proﬁles by ﬂow-injection MS/MS cannot distinguish compounds of the same mass (geometric isomers) and therefore liquid chromatographic separation before MS/MS is required. Stable isotope dilution UPLCMS/MS methods have been developed for the simultaneous determination of isobutyryl and butyryl L -carnitine, and for isovaleryl carnitine, D and L 2-methylbutyryl L -carnitine diastereomers as well as valeryl L -carnitine and pivaloyl L -carnitine in dried blood spots and plasma. Dried blood spots are extracted with methanol containing stable isotope internal standards and plasma proteins are precipitated with methanol containing stable isotope internal standards and butyl esters formed. Liquid chromatographic separation of acylcarnitine butyl esters is achieved with methanol/water gradients with a C18 BEH, 1 · 100 mm, 1.7 lm UPLC column, at 60 C, with a run time of less than 10 min. The isomers are detected and quantiﬁed with a Quattro Premier MS/ MS by positive ESI using MRM transitions from protonated molecular precursor ions of acylcarnitines and stable isotope labeled acylcarnitine internal standards to the common product ion at m/z 85. Reference ranges for isobutyryl carnitine, butyryl carnitine, isovaleryl carnitine, and 2-methylbutyryl carnitine isomers for normal newborns and infants and concentrations of these isomers for patients with conﬁrmed metabolic disorders will be presented.
58. The identiﬁcation and characterization of glucocerebrosidase activators and inhibitors as potential therapeutic agents for Gaucher disease. Daniel Urbanb, Wei Zhenga, Aashish Goswamib, Ozlem GokerAlpanb, Ehud Goldingb, Janak Padiaa, Jim Inglesea, Chris Austina, Ellen Sidranskyb. aNIH Chemical Genomics Center, National Human b Genome Research Institute, NIH; Medical Genetics Branch, National Human Genome Research Institute, NIH. Gaucher disease is caused by an inherited deﬁciency of the lysosomal enzyme glucocerebrosidase (GC). It has been suggested that chemical chaperones might correct the misfolding of the mutant enzyme and thus restore its function. Using quantitative high throughput screening (qHTS) of a compound collection of over 60,000 chemicals, we identiﬁed 299 inhibitors and 56 activators, with a hit rate of 0.57%. Amount these were one structure class of GC activators and three classes of GC inhibitors. Twelve compounds were found to have AC50 values at less than 0.5 micromolar concentrations. The best inhibitors included sulfonamides, quinolines, and triazines. In order to characterize the mechanism of action for these compounds and to determine their selectivity proﬁles, we performed enzyme kinetics assays using ﬁre diﬀerent lysosomal hydrolases. We found that both the GC activators and inhibitors identiﬁed in our screening were highly selective for GC and not the other enzymes tested, and showed better selectivity than existing GC inhibitors. The identiﬁcation of these selective compounds conﬁrms the power of qHTS, which may
ultimately lead to the development of small molecule drugs that can be tested as therapeutic agents for Gaucher disease. 59. Retrospective genotyping of newborn screening cards for the P479L carnitine palmitoyltransferase (CPT1) variant: Correlation with acylcarnitine proﬁles and estimation of incidence in British Columbia. G. Sinclaira, J. Maa, P. MacLeodb, L. Arbourb, H. Vallancea. a Departments of Pathology, University of British Columbia, Vancouver, Canada; bMedical Genetics, University of British Columbia, Vancouver, Canada. Introduction: A common variant of CPTI deﬁciency (P479L) ﬁrst identiﬁed in the Canadian Inuit population has also been identiﬁed in 21 First Nations children in British Columbia. All BC cases presented with one or more of the following: hypoglycemia, liver disease, and sudden unexpected death. Several of the parents were P479L homozygous suggesting a high frequency of this allele in BC. The objective of this study was to assess the optimal acylcarnitine parameters to identify the CPTI P479L variant from newborn screening blood spots cards and then to estimate the incidence of this CPTI variant in the BC population. Method: Archived acylcarnitine data from the 2004 birth year (n = 41,900) was mined as a function of either the C0/C16 + C18 ratio or free carnitine (C0) values. For C0/C16 + C18, a total of 158 cards were randomly chosen from above means + 6SD cutoﬀ (N = 246). For C0, a stratiﬁed random sample (n = 279) was collected above means + 1SD (N = 5464). Test performance was determined by ROC analysis. A Taqman allelic discrimination assay on an ABI real-time PCR instrument was used to genotype the blood spot cards for the P479L variant and this genotype was used to deﬁne aﬀected (P479L homozygous) and unaﬀected (P479L heterozygous or non-carrier) for the subsequent ROC analysis. Results: ROC analysis of the sample selected by C0/C16 + C18 ratio revealed an area under the curve (AUCROC) of 0.493 ± 0.081 suggesting a non-discriminatory test. Inspection of the data revealed a high proportion of false positives from cards with elevated ratios due to very low total carnitine levels. For C0 sampling, a total of 62 individuals out of 279 sampled were homozygous for P479L. The ROC for C0 alone revealed an AUCROC = 0.860 ± 0.033. Analysis of the full acylcarnitine spectrum, however, revealed that the most discriminatory test was the ratio C0/ C18:1 + C18:2 with an AUCROC = 0.961 ± 0.016. Based on this data, a C0/C18:1 + C18:2 ratio cutoﬀ of 28, had a speciﬁcity of 0.84 and sensitivity of 0.95 for identifying P479L homozygotes. Conclusions: Applying this cutoﬀ to the population as a whole and correcting for the sensitivity and speciﬁcity of the test, we estimated that 500 P479L homozygous individuals were born in BC in 2004. A further study is underway to determine if the P479L mutation is in fact conﬁned to First Nations and to clarify the clinical signiﬁcance of this common and potentially treatable genetic variant.
60. Acceptable low-phenylalanine foods and beverages can be made with glycomacropeptide from cheese whey for individuals with PKU. S.C. Van Calcara, K. Limb, K. Nelsonb, S.T. Gleasona, D.M. Neyc. a Waisman Center, University of Wisconsin, Madison, WI 53706, USA; bWisconsin Center for Dairy Research, University of Wisconsin, Madison, WI 53706, USA; cDepartment of Nutritional Sciences, University of Wisconsin, Madison, WI 53706, USA. Glycomacropeptide (GMP) is a whey protein produced during cheese making when bovine kappa (j)-casein is cleaved by chymosin into para-jcasein, which remains with the curd, and GMP, which remains with the whey. Pure GMP contains elevated amounts of threonine and isoleucine and no aromatic amino acids including phenylalanine (phe). The objective of this study was to make a variety of palatable, low-phe foods and beverages with GMP and to assess their acceptability by conducting consumer sensory studies in subjects with PKU. Foods and beverages containing GMP (BioPURE-GMPTM, Davisco Foods International, Inc., Le Sueur, MN) were developed at the Food Applications Laboratory, Wisconsin Center for Dairy Research. Informed consent was obtained from each subject prior to the sensory studies. PKU subjects (n = 35, ages
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 12–22 years) tasted six products made from GMP and two commercial products during summer PKU camp in 2004 and 2005. Foods and beverages were rated using a ﬁve-point hedonic scale (1 = dislike very much to 5 = like very much). Independent t-test was performed to analyze mean acceptability in ﬁve categories including appearance, odor, taste, texture, and overall acceptability. Values are means ± standard deviations. Among the foods and beverages, GMP strawberry pudding was the most acceptable (overall score of 4.4 ± 0.6). Other foods in order of overall acceptability were GMP snack crackers (3.6 ± 1.4), GMP chocolate beverage (3.5 ± 0.9), GMP sports beverage (3.3 ± 1.1), GMP strawberry fruit leather (2.9 ± 0.8), low protein crackers (2.9 ± 1.3), and GMP in apple juice (2.6 ± 1.1). An amino acid-based chocolate beverage was the least acceptable in PKU subjects (2.2 ± 1.5). PKU subjects rated the taste, odor, and appearance of GMP snack crackers as signiﬁcantly more acceptable compared to commercial low protein crackers (P 6 0.05). PKU subjects rated the odor and appearance of a GMP sports beverage as signiﬁcantly more acceptable compared to apple juice supplemented with GMP. These data demonstrate that a variety of palatable, low-phenylalanine foods and beverages can be made with GMP as a potential protein source for individuals with PKU. Studies in individuals with PKU are ongoing in our research group to establish the safety and eﬃcacy of GMP in the nutritional management of PKU. Supported by NIH DK071534. 61. Finding Twinkle in the eyes of a 71-year-old lady. J.L.K. Van Hovea, C. Ricea, V. Cunninghama, L.-J.C. Wongb. aDepartment of Pediatrics, University of Colorado at Denver Health Sciences Center, Denver, CO, USA; bDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. Progressive external ophthalmoplegia (PEO) is often caused by a mitochondrial disorder. The molecular basis for this can be a deletion in mitochondrial DNA, a point mutation in a mtDNA tRNA gene, or a disorder characterized by multiple mtDNA deletions, which is often caused by a mutation in one of the genes ANT1, POLG1, or C10orf2. Case report: A 71-year-old lady was referred for investigation of a probable mitochondrial disorder. She had developed progressive external ophthalmoplegia since the age of 55 years. A muscle biopsy done at the age of 63 years showed a few ragged red ﬁbers. She also had cataracts, adult-onset diabetes mellitus, paresthesias in her ﬁngers and toes, cognitive defects with short-term memory problems, sensorineural hearing loss, and mild ataxia. She had chronic progressive muscle weakness particularly of the limb girdle, and uses CPAP at night for oxygen desaturation during sleep. On physical exam, she had complete ophthalmoplegia, muscle weakness with positive Trendelenburg sign, and ataxic gait. MRI showed scattered white matter changes unchanged over 6 years. Methods: Muscle tissue was examined for deletions by Southern blot. Point mutations were analyzed by dot blot analysis. MtDNA was sequenced. The genes POLG1, ANT1, and C10orf2 were sequenced. Results: Neither dot-blot analysis nor sequencing of mtDNA showed a pathogenic mutation. Southern blot did not show deletions in mtDNA. Sequencing of the nuclear genes showed an R303Q mutation in the C10orf2 gene encoding for the Twinkle protein. Discussion: The mutation R303Q has not been reported before, but a similar mutation R303W has been reported. Mutations in Twinkle have been reported in older patients >50 years of age with PEO, whereas other causes tend to present at an earlier age. Conclusion: In older patients with PEO and other symptoms associated with mitochondrial disease, the Twinkle gene should be analyzed regardless of the presence or absence of recognizable deletions on Southern blot in muscle, and even in the absence of a family history of PEO. 62. Outcomes and complications of CPT1A deﬁciency observed during the long-term follow up of 4 cases. Nithiwat Vatanavicharna, Denise Salazarb, Pertchoui B. Mekikiana, William R. Wilcoxa,c. aMedical Genetics Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA; bDepartment of Biochemical Genetics, Quest Diagnostics Nichols Institute, San Juan Capristano, CA, USA; cDepartment of Pediatrics, UCLA School of Medicine, Los Angeles, CA, USA.
Deﬁciency of hepatic carnitine palmitoyl transferase (CPT-1A) is a rare autosomal recessive disease of long-chain fatty acid transport into the mitochondria. Approximately 30 cases have been reported, and most clinical manifestations develop in infancy or early childhood. We follow four cases of CPT-1A deﬁciency. Case 1 was a product of a non-consanguineous East Indian couple. He had several episodes of encephalopathy and metabolic acidosis since 7 months of age. At 19 years of age, he had an episode of encephalopathy, hyperammonemia, and severe intrahepatic cholestasis with otherwise relatively normal liver functions. A brain MRI showed bilateral, symmetrical T2-weighted hyperintensities of the basal ganglia and brain stem. After recovery, he had a resting tremor, but intelligence was unaﬀected. CPT-1 activity in cultured ﬁbroblasts was 9% of normal. Case 2 is a product of a non-consanguineous Hispanic couple. Her ﬁrst episode of encephalopathy, hypoglycemia, and hyperammonemia occurred at 14 months of age, and she had distal renal tubular acidosis (RTA) that resolved with medium-chain triglyceride (MCT) oil supplementation. CPT-1 activity in cultured ﬁbroblasts was 11% of normal (reported by Falik-Borenstein et al., 1992). She has had episodes of pancreatitis without hypertriglyceridemia since 10 years of age. At 19 years of age, she had an episode of encephalopathy, hyperammonemia, pancreatitis, elevated liver transaminases, cholestasis, and macrocytic anemia. A magnetic resonance cholangiopancreaticography showed mild dilatation of the distal pancreatic duct. She had a homozygous 298C > T substitution in the CPT-1A gene, predicted to cause premature truncation of the protein (Gobin et al., 2002). Cases 3 and 4 are identical twins born to a consanguineous Hispanic couple. Both had a ﬁrst episode of encephalopathy, hypoglycemia, hyperammonemia, and distal RTA at 7 months of age. They had persistent RTA and recurrent episodes of lethargy, with or without hypoglycemia, during intercurrent illnesses in spite of MCT supplementation. CPT-1 activity was 3% of normal control in the lymphocytes and 26% of normal control in the liver. Mutation analysis identiﬁed the same homozygous mutation as found in Case 2, on the same ancestral haplotype. Both families originate from the Mexican state of Durango. Individuals with CPT-1A deﬁciency are at risk for metabolic decompensation, severe cholestasis, recurrent pancreatitis, and chronic RTA in spite of supplementation with MCT oil.
63. Enzymatic analysis of MCAD, VLCAD, and glutaryl-CoA dehydrogenase in lymphocytes with implication for neonatal sceening. R.J.A. Wanders, J.P.N. Ruiter, M. Duran, F.A. Wijburg, H.R. Waterham. University of Amsterdam, Academic Medical Center, Department of Pediatrics, Emma Children’s Hospital, The Netherlands, Department of Clinical Chemistry, Lab of Genetic Metabolic Diseases, Meibergdreef 9, 1105 AZ, Amsterdam, The Netherlands. Neonatal screening for a range of inborn errors of metabolism is being introduced in an increasing number of countries around the world. Discrimination between false- and true positives requires the availability of straight forward and unequivocal methods of detection. We have focused on the generation of simpliﬁed procedures for the enzymatic analysis of medium chain acyl-CoA dehydrogenase (MCAD) and verylong-chain acyl-CoA dehydrogenase (VLCAD) in lymphocytes, using ferricenium hexaﬂuorophosphate as electron acceptor, and phenylpropionyl-CoA, and palmitoyl-CoA as speciﬁc substrate for MCAD and VLCAD, respectively, at least in ﬁbroblasts. To this end we have developed HPLC-based methods, which allow unequivocal identiﬁcation of MCAD and VLCAD deﬁciency in lymphocytes of newborns. The feasibility of the two methods has recently been tested in practice in neonatal screening programs with excelent results [Derks et al., submitted for publicaton; Spiekerkoetter et al., Pediatrics (2006) 118 (3) 1065–1069]. The same methodology has also been used for glutaryl-CoA dehydrogenase and the validity of the assay has been tested in lymphocytes from proven GA1 patients with excellent discrimination between patients and controls.
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265
64. HEM dysplasia and ichthyosis are laminopathies rather than inborn errors of cholesterol synthesis. C.A. Wassifa, K.E. Brownsona, W.K. Wilsonb, M.F. Starostc, F.D. Portera. aHDB, NICHD, Bethesda, MD, USA; bRice University, Houston, TX, USA; cNIH, OD, ORS, Bethesda, MD, USA. Mutations of the lamin B receptor (LBR) cause both HEM dysplasia in humans and Ichthyosis in mice. LBR is a bifunctional protein with an amino terminal lamin B binding domain and carboxyl terminal sterol D14reductase domain. Although only a minor accumulation of precursor sterols was observed in HEM dysplasia patients, it has been proposed that LBR is the primary sterol D14-reductase, and that impaired sterol D14reduction underlies HEM dysplasia. However, a second protein, Dhcr14, also has sterol D14-reductase activity. We thus hypothesized that LBR and Dhcr14 could be redundant with respect to sterol D14-reduction. To test this idea, we obtained Ichthyosis mice (Lbr)/)) and disrupted Dhcr14 in mouse embryonic stem cells to produce Dhcr14)/) mice. Dhcr14)/) mice are phenotypically normal. To test for a digenic phenotype, we bred Lbr and Dhcr14 heterozygous mice to obtain compound mutant mice. Lbr)/):Dhcr14)/) mice die soon after implantation. Lbr)/):Dhcr14+/) mice die in utero or soon after birth. In contrast, Lbr+/):Dhcr14)/) mice appear normal at birth, but by 10 days of age they are growth retarded and neurologically abnormal (ataxia and tremors). Pathological evaluation demonstrated vacuolation and swelling of the myelin sheaths in the spinal cord consistent with a demyelinating process in Lbr+/):Dhcr14)/) mice. This was not observed in either Lbr)/) or Dhcr14)/) mice. In contrast to Lbr)/) mice, Lbr+/-:Dhcr14)/) and Dhcr14)/) mice have normal skin. Also, in contrast to Lbr)/) mice, Dhcr14)/) mice do not have Pelger-Hue¨t anomaly. Gas Chromatography/Mass Spectroscopy (GC/MS) was used to characterize liver and brain cortex sterols from 10-day-old mice. Liver sterols were normal in Lbr)/), Dhcr14)/), and Lbr+/):Dhcr14)/) mice. However, signiﬁcantly elevated levels (50% of total sterols) of cholesta-8,14-dien-3b-ol and cholesta-8,14,24-trien-3b-ol were found in brain tissue from 10-day-old Lbr+/):Dhcr14)/) mice. The identity of these precursor sterols was conﬁrmed by NMR analysis. A much smaller and transitory increase in these precursor sterols was observed in Lbr)/) and Dhcr14)/) mice. Minor elevations (0–3% of total sterols) were observed in brain from 10-day-old Lbr)/) mice, and a moderate elevation (15% of total sterols) was observed in brain from 10-day-old Dhcr14)/) mice. GC/MS analyses of sterols from both brain and liver tissue obtained from 21-day-old Lbr)/) and Dhcr14)/) mice were normal. Expression analysis of Lbr and Dhcr14 in liver tissue supports the redundant nature of these two proteins with respect to sterol D14reduction. Our data support the idea that HEM dysplasia and Ichthyosis phenotypes are due to impaired lamin B receptor function rather than impaired sterol D14-reduction. Impaired sterol D14-reduction gives rise to a novel murine phenotype for which a corresponding human disorder has yet to be identiﬁed.
65. A lethal autosomal dominant defect of mitochondrial and peroxisomal ﬁssion. Hans R. Waterhama, Janet Kostera, Carlo W.T. van Roermunda, Petra A.W. Mooijera, Ronald J.A. Wandersa, James V. Leonardb. aLaboratory Genetic Metabolic Diseases (F0-224), Academic Medical Center, University of Amsterdam, The Netherlands; b Department of Pediatrics, Institute of Child Health, University College London, UK. Mitochondria form a dynamic network which is subject to continuous fusion and ﬁssion processes for which several proteins involved have been identiﬁed. We report a deceased newborn female who had microcephaly, abnormal brain development, optic atrophy, and hypoplasia, failure to thrive, persistent lactic academia, and raised plasma very long-chain fatty acids. Extensive laboratory investigations revealed a defect in the ﬁssion of both mitochondria and peroxisomes due to a single heterozygous, but dominant negative mutation in the DLP1 gene. DLP1 codes for the dynamin-like protein DLP1, previously shown to be involved in the ﬁssion of these two organelles. Overexpression of mutant DLP1 in control ﬁbroblasts resulted in the aberrant mitochondrial phenotype, whereas overexpression of wild-type DLP1 in ﬁbroblasts of the patient reversed the
aberrant mitochondrial phenotype to normal. The autosomal dominant inheritance of the observed defect was conﬁrmed by the absence of the mutation in the DLP1 genes of the patient’s parents. Our ﬁnding represents the ﬁrst patient from a new class of diseases with a combined defect in both mitochondria and peroxisomes. 66. Creatine transporter deﬁciency: Repeat urine testing and false positives. Tim Wood; Judy Haley; Harold Taylor. Greenwood Genetic Center, Greenwood South Carolina, USA. Creatine transporter (CrT) deﬁciency is an X-linked disorder caused by mutations in the SLC6A8 gene located at Xq28. Aﬀected males present with mental retardation, hypotonia and seizures. Carrier females may be normal or have a milder clinical course. Diagnostic testing begins with urine screening or cerebral proton MRS studies followed by conﬁrmatory DNA or cellular assays. Elevations in urinary creatine have been identiﬁed in all aﬀected males; however, false elevations can occur. Obtaining a repeat ﬁrst void urine sample may be a relatively quick, less invasive method to identify false positives and limit expensive follow up testing. To evaluate this hypothesis, multiple random urine samples were collected from two males with conﬁrmed CrT deﬁciency. All 14 samples showed signiﬁcant elevations (ranging from 1595 to 2965 mmol creatine/mol creatinine; normal range 5–560 mmol creatine/mol creatinine) suggesting that urinary creatine levels in aﬀected males are consistently elevated and do not reach into the normal range. We also evaluated this hypothesis by repeat sampling of four males with initial elevations. Urinary creatine elevations persisted in two patients while values in the remaining two returned to normal. Follow up molecular testing in all four patients identiﬁed mutations in only the two patients with consistent elevations. These data along with the lack of any reports of aﬀected males with normal urinary creatine levels suggest that repeat urine testing maybe a cost eﬀective method to identify false positives and streamline follow up testing for CrT deﬁciency.
67. Hepatic mtDNA depletion syndrome caused by novel mutations in MPV17 gene encoding a mitochondrial inner membrane protein. Q. Zhanga, N. Yazigib, E.S. Schmitta, D. Kerrc, C.L. Hoppelc, P.C. Choua, J. Wanga, M.A. Puchowiczc, D. Adamsd, N. Leslieb, E.E. Baldwine, R.G. Bolese,f, W.J. Craigena, L.J. Wonga. aDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA; bDepartment of Pediatrics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA; cThe Center for Inherited Disorders of Energy Metabolism, Case Western Reserve University School of Medicine, and Rainbow Babies and Children’s Hospital, Cleveland, OH, USA; dDepartment of Pediatrics, Section of Genetics and Metabolism, Albany Medical Center, Albany, New York, USA; eDivision of Medical Genetics, The Saban Research Institute, Children’s Hospital, Los Angeles, CA, USA; fDepartment of Pediatrics, University of Southern California, Keck School of Medicine, Los Angeles, CA, USA. Background: A growing number of patients with respiratory chain (RC) dysfunction due to mitochondrial DNA (mtDNA) depletion have been reported. The defective genes identiﬁed are mostly involved in the biosynthesis of mtDNA. The onset of disease usually occurs during the ﬁrst months of life with a fatal outcome. The molecular defects in at least three nuclear genes are known to cause mtDNA depletion in liver with central nervous system involvement. These include DNA polymerase gamma (POLG), deoxyguanosine kinase (DGUOK), and MPV17. Mutations in POLG gene have been associated with Alpers syndrome, which is characterized by intractable seizures and liver failure. DGUOK deﬁciency causes more tissue-speciﬁc fatal infantile liver disease and encephalopathy. Mutations in MPV17, encoding an inner mitochondrial membrane protein, were recently reported in patients with infantile hepatic mtDNA depletion. Objective: In order to understand the importance of the MPV17 gene in the molecular etiology of patients with liver failure and an apparent mitochondrial respiratory chain disorder, we sequenced the coding exons of the gene
SIMD Abstracts / Molecular Genetics and Metabolism 90 (2007) 227–265 in 80 patients. Results: Four patients with deleterious mutations were identiﬁed. To date, only four MPV17 mutations have been reported in three unrelated families with infantile hepatic mtDNA depletion and in ﬁve American Navajo families with neurohepatopathy. Three of our patients with MPV17 mutations presented at infancy with liver failure and died early. One patient had liver transplantation at age 5 months and is still living at age 7 months. Sequence analysis of the MPV17 gene revealed a homozygous nonsense mutation, W69X, in two Jordanian siblings, a homozygous missense mutation, R50W, in a Mexican patient, and compound heterozygous microdeletions in a European Caucasian patient. Three of the mutations are novel. Electron transport chain enzymes in aﬀected tissues were deﬁcient, and mtDNA copy numbers were below 20% of mean. Conclusions: Our results suggest that mutations in the MPV17 gene occur in all ethnic groups and may not be uncommon in patients with infantile hepatic mtDNA deletion syndrome.